AMCG00015481 (LOC104949171)


Basic Information

Item Value
gene id AMCG00015481
gene name LOC104949171
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10167627 ~ 10176121 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015481
GGAGTAGCCAACCACCGATGGAGCCTTTTTAACTGGCGTGAGAGGAAACCAATGGGAGGGCAGTAGCGGTCGACTCCCCGCCCTCCTGGTCCAATGAAATTGGGCCGAGGGCGGGGCGGGAGGTTGTCAATTCACAGTAGCTTCTGGAACCCTCATGGTAGCAtgatggagaaagtaTCAGAGTTGAAGGACAGGGGGAACAAGGCCCTGAGCTCGGGGGATGTGACGGAGGCAGTGCGGTGCTACACTGAGGCTCTGACCCTTGACCCTGCGAACCATGTCCTGTACAGTAACCGCTCAGCCGCCCACGCCAAGGCGGGTGACTACCACAGTGCCCTGCAGGACGCCTGTAAGACTGTGGAGATCAAGCCGGACTGGGGCAAGGGTTACTCTCGGAAGGCAGCTGCACTGGAGTTCCTGGAGCGTTTTGAGGATGCCAAGCAGACCTATCAGGAGGGCCTGAAACATGAGCCGGCCAATCAGCAGCTGAAGGAGGGGCTGCAGAACATGGAGGCGCGGCTAGCAgAGAAGAAGATGATGAACCCGTTTGCAATGCCAAACCTGTACCAGAAGCTGGAGGCGGACCCTCGCACCCGCGCCCTGCTGGCCGACCCTGGGTACAAGGAGCTGCTGGAGCAGCTCAGGAGCCGGCCCTCCGATCTGGGCATGAAGCTGCAGGATCCGCGCGTGATGACAACCCTCAGCGTGCTTCTGGGAATCGACCTGGCGGGGGCCGAGGATGACGAGGACGAGCTCCCCCCACCGCCGCCCAAGAAGGACCcgcagccccccccacccacccagcCCCAGGAGGACCTGCCACCCAACAAGAGAGAGGCTCTGAGAGAGAAGGAGCTGGGGAACGAGGCGTACAAGAAGAAGGACTTCGAGACGGCACTCAAACACTACGAGGCGGCGCTGCAGGCCGACCCTACCAACATGTCCTACCTGTCCAACCAAGCAGccGTGTTCTTCGAGAAGGGGGATTTTGCTCGCTGTCGGGAGCTggcctACGCTCGTATCGGGAACTCCTACTACAAGCAGGAGCTTTATAAGGAGGCTGTACAGTCTTACAACAAGAGCCTTACGGAGCATCGCATGCCCGAGGTGCTCAAGAAGTGCCAACAGGCAGAGAAGATCTTGAAGGAGCAGGAGAAGCAGGCCTACATAAACCCAGAGGTGGCTCTGGAGGAGAAGAACAAGGGCAACGAGGCCTTCCAGAAAGGAGACTACCCCTTGGCCATGCGCCACTACACTGAGGCCATCCGCCGCAACCCCCATGACGCCAAACTGTACAGCAACCGCGCAGCCTGCTACACCAAGCTGCTGGAGTTCCAGCTGGCCCTCAAGGACTGCGAAGAATGTATTCGCTTGGACCCCGCCTTCAtTAAGGGTTATACCCGCAAGGCTTCTGCTCTGGAGGCCATGAAGGACTTCACCAAAGCCATGGAATTCTACCAGAAAGCTCTGGAGCTGGACTCCAACTCGAAGGAGGCTGCGGAGGGCCTGCAGCGCTGCGCGATGAGCCAGGCGGTGCACACCGACACCCCCGAGGATGTGAAGCGCCGCGCCATGTCCGACCCCGAGGTGCAGCAGATTATGAGTGACCCGGCCATGCGCATCATCCTGGAGCAGATGCAGAAGGACCCGCAGGCGCTCAGCGACCACTTGAAGAATCCAGTGATCGCTCAGAAGATCCAGAAGCTGATCGATGTGGGATTGATTGCCATAAGGTGATCAACTGGAATGAGAGAGGCAGGAGAAAAGAGGAGAATGAAGAGAGAAGAGTAAGAAAAGCAATGCAAGACACCAGTGGAACAAGACTCCATTCCCCAGAATCctcaccacccccccaccccaaactCGCAGGGCCCCACTGTCACCTTTGACCCCTGAGCCCCAGCACAAGAAAATCAAAATCTCATATTGGGGGAGGGGTTAAAACGGGACACATTTCAGACCGAGAAtttaacagatacattttttttttttttgttttgttctatcAGACTTCTGAAACAGCGGATACAGATTTGCAGGAGTGCCTGGGCAGACCTGGGGGGCGAGGGGgtgcactgttttattttcatatttgtgcagtcattttttatttccatttctgtagGCAGCTCTTTCTGCCGCCACACTGTTCGCAATCTGATTTAAAAGAATACTATGAAAGATCGTAATTACTGTAGTCCTCGTTAGCAGGGGCGTCTCCTTGCAGCTCCTACTGTAACAATGCACTACCAATAATAACAGGAGTAATAGATTGCATTTATCGCCTTTCGCTCCCCCTCCCCGGCACAGCGCctctgctgtactggactgtctgtccaggaccagggctgcagtCTCTGTTCCTACAGTAGGAAGAATACTAATACACGAAAATGAAATCTTAATCTCTCTTCACGGGGCATCCATTCCGATTGTGCAGCGCATACCTCTCAGTGACAGCCATGCAAAAAAAGGCCTAATGATAATAAATGATGAAAACGATGACCGTCTCGGTGTGTGTGTCCGATCCCATCGGGCTCTGCGTTCATGAGACAATAAAGAGACAGTGTTTGTATGAAGGAAGCTTGTCTGTTTTGTtatggggtgtgtgtgtgtgtgtctactgtGTATGTCTCTAGCTTTGTCTCTCTTTATCGGTGTGTGTTGCGCACCCGTCTCTgattttgtctgtgtgtatctctgCATCTGTCTATATCTGTCTGCTTGCGTCTCTCGCTGTGTGTCTATATTTGTTTCTCTATCGATGTGTTTGGgtgcatttgtataatttgGCTGTGTATgtgactgtctctgtgtgtgtcttgctAAAGACCCAGGGTGGAGACCCCTGCTCTGACTGCATGTCCTTGTTCCCATCCCCACAAACTTTCCCACAGTCCACTTCTGCAGAGTAGTCTGGTACCAGTTTTACGTGCCTGGTTCAGAAGCAGTTTTTTGCAATTGCTTGCTTTGCCCTGCCCCCTGGATTCAAACGccaacataaatacatgcatgtataCAGGTGGCACTATCGATGTATAAAGAGCCTGTAGTTGTGGTCTCCTGCCATCAGAGGCAATTGGTCTCAATCCatg

Function

NR:

description
PREDICTED: stress-induced-phosphoprotein 1-like

GO: NA

KEGG:

id description
K09553 STIP1; stress-induced-phosphoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015481 True 3095 mRNA 0.54 14 10167627 10176121

Neighbor

gene id symbol gene type direction distance location
AMCG00015480 NA coding upstream 5859 10158828 ~ 10161768 (+)
AMCG00015483 NA coding upstream 68453 10095089 ~ 10099174 (+)
AMCG00015484 NA coding upstream 84541 10082004 ~ 10083086 (+)
AMCG00015473 eef1g,LOC107661998 coding upstream 140058 10016456 ~ 10027569 (+)
AMCG00015476 rpb7,POLR2G,polr2gl,polr2g coding upstream 151921 10013066 ~ 10015706 (+)
AMCG00015482 NA coding downstream 3703 10179824 ~ 10188538 (+)
AMCG00015489 zbtb3,LOC107723820,LOC107602571 coding downstream 17586 10193707 ~ 10195872 (+)
AMCG00015490 NA coding downstream 51930 10228051 ~ 10228836 (+)
AMCG00015488 NA coding downstream 87901 10264022 ~ 10264459 (+)
AMCG00015491 NA coding downstream 101319 10277440 ~ 10289390 (+)
G98060 NA non-coding upstream 288491 9878459 ~ 9879136 (+)
G97999 NA non-coding upstream 461591 9705724 ~ 9706036 (+)
G97998 NA non-coding upstream 464518 9702836 ~ 9703109 (+)
G97989 NA non-coding upstream 509761 9655468 ~ 9657866 (+)
G97777 NA non-coding upstream 820383 9345762 ~ 9347244 (+)
G98195 NA non-coding downstream 20506 10196627 ~ 10197404 (+)
G98255 NA non-coding downstream 147137 10323258 ~ 10323970 (+)
G98244 LOC106578020 non-coding downstream 162987 10339108 ~ 10340845 (+)
G98277 NA non-coding downstream 189261 10365382 ~ 10365647 (+)
G98282 NA non-coding downstream 202486 10378607 ~ 10379031 (+)
G98093 NA other upstream 81115 10085428 ~ 10086512 (+)
AMCG00015475 NA other upstream 154739 10001214 ~ 10012888 (+)
AMCG00015464 NA other upstream 236781 9929592 ~ 9930846 (+)
G98053 NA other upstream 295622 9815718 ~ 9872005 (+)
AMCG00015492 NA other downstream 36880 10213001 ~ 10222496 (+)
G98251 NA other downstream 140787 10316908 ~ 10317325 (+)
AMCG00015504 NA other downstream 235766 10411887 ~ 10418700 (+)
G98302 NA other downstream 272045 10448166 ~ 10450663 (+)
G98402 NA other downstream 559858 10735979 ~ 10741133 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location