AMCG00015489 (zbtb3,LOC107723820,LOC107602571)


Basic Information

Item Value
gene id AMCG00015489
gene name zbtb3,LOC107723820,LOC107602571
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10193707 ~ 10195872 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015489
ATGGAGTTCCCCCACCACAGCCGGCAGCTCCTGCGGGGGCTGCGGGACCAGCGGAGACAGGGCTTCCTGTGCGACTGCACCGTGCTGGTCGGCTCCTGCCGCTTCCTGGCCCACCGTGCTGTCCTGGCCTCCTGCAGCCCCTTCTTCCACATGTTCTACTCCGAGCAGCCGCTCTTGGGCGGCAAGCTGGGCCCCCCTGGCACCAGTCGCCCCCTCGCCACTGCCCCCGGGACCCCTTCCTCCACCTCCGCctgcccctcctcctccaccgcCTCCGCCATGGCCGCGGTGTCCATCAACGGTGAGATTGTCACCCCCCCCGCCTTCGGGCTGCTGCTGGACTTCATGTATGAGGGCACCCTGCGTCTGACTGCCCACCCGCCCCCGGAGGACGTGCTTGCGGCCGCCAGCTACCTGCACATGAACGACATTGTGCGCGTGTGCAAGCGCCGACTGCAGGGGCGGGGCCTGGCCGAGGCGGACAGCACGGGTGGCCGGGGGGAGGAAGACGGGGGACCCGGCCGCGCCCCGCCCCCTCCGTACCCCTCCTCCCACTTTCTGGATCGGAAGCCGGACACCGCCTGCGTCGCCAGCCCCCCCAAGTTCTCCCCCAccactctccctccccctcctcctcctcctcctcctcctctgttggCTCTTCCTCAGCCCCCTCCCTCCGCCGCCCTTCCTGCAACGCCCATgctccccccctcccacacccactcccactcccactcccaccaccactcctcctcctcctcctcctcctcctcccagtcTGCCCTGGTCCGATTTGCTGGGGGGTCCATTTCAGACGTGGCTGACACCACCCAGCCGGGCATGGAGCCTGaggtggggtgtggggggggcagagcGGGGTCTGCCGGCCCCCTGCCCCGGCCCCGCAGTCAGGGGGACACCGGTCTGGCCAGCCCTTGCAGCTCCACCGAGACCTACCCCACACCCCACttccacacacagcagcccccccctcccactgcctcctcctcctcctccttcctcctgcCTGGGTTATCCTACCCCAGCTCTGCCTCTGCtgcccactcccactcccacactCCCCAACCGGGCAGCAGCACCAGCCCTGGCCAGCCTCTTACCAGTGAGGGCTCTGATTTGGCCCAGTTTGGCACACTGACTGGACCAGAAACCCCCATGCCGCCACGGTCCACTCCTCTCTCGTTGCGCCCCTTAGCCGTCGGGTCAGAGGTCGGGGGTCAGGAGTTGCGGGTGGGAGAGGGACAGGGTGGGACAGACCAGCCACAGGACAACAGACCTGGCGTGGGGGAGGGCTCTCTGCTACCCCCGCAGTGCAGCCACGGGCAGCCCAGTCCCAGCCTCCTGCCTGTAGGGGGCGATGGCCgggagagcagagaggaggaggaggaaggtgaggaggaggaggggataagagagggggagggactGGAGGTGGATCCCAGCAAAGTCAAAGTGGAAGCCATAATTATTTCGGACGAGGAACTTGAAGAGATGGAAGGCCTCTTtcagagagagggtgagggggatgaagaggaggatgaagatGAGGGGCTGGAGGACCAGGGCAGGGGGCTGGAGGAGgaagacgaggaggaggaggaggaggaggtgggggaggaggaggatgaggaagcAGCATTGGCCGCTCACATGGTTGGCAACCCCCACTTCCTGCCGCCACACACCCTCTTCCTGTCCCACTCCGGTGGCGGCGGTGGTGGTGACCCCCTCAACCTGCACCCTCTGGCCCCGCCACCACCTCCCCTGGCCCCCCACAGCTCTGCCCCTGCTCCGCCCCCGgccttcccctccccctccggCTCCCTTGCCCACCCCCACTCCGCCCACCTGCTGCCCGCTGCCACACACCCCGACCCCGTGTACTTCCAGGACTTTCACGACTCGCTGGCGACCTACGTGGAGGAGGTGCCCACCTGCACCACGTGCGGCAAGACCTTCTCCTGCGCCTACACGCTGCGGCGCCACGCCATCGTGCACACGCGTGAGCGCCCCTACGAGTGCCGCTACTGCTACCGCAGTTACACGCAGTCGGGCGATCTGTACCGGCACATCCGCAAGGCCCACAACCACGACCTGCCTCTCAAGCGCAGCAAGACCGAGGCCCAGACGCCCCCGCAATGA

Function

symbol description
zbtb3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB3 (zinc finger and BTB domain containing 3).

NR:

description
PREDICTED: zinc finger and BTB domain-containing protein 3

GO: NA

KEGG:

id description
K10490 ZBTB3; zinc finger and BTB domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015489 True 2166 mRNA 0.68 1 10193707 10195872

Neighbor

gene id symbol gene type direction distance location
AMCG00015482 NA coding upstream 5169 10179824 ~ 10188538 (+)
AMCG00015481 LOC104949171 coding upstream 17586 10167627 ~ 10176121 (+)
AMCG00015480 NA coding upstream 31939 10158828 ~ 10161768 (+)
AMCG00015483 NA coding upstream 94533 10095089 ~ 10099174 (+)
AMCG00015484 NA coding upstream 110621 10082004 ~ 10083086 (+)
AMCG00015490 NA coding downstream 32179 10228051 ~ 10228836 (+)
AMCG00015488 NA coding downstream 68150 10264022 ~ 10264459 (+)
AMCG00015491 NA coding downstream 81568 10277440 ~ 10289390 (+)
AMCG00015498 NA coding downstream 107867 10303739 ~ 10305772 (+)
AMCG00015503 NA coding downstream 194421 10390293 ~ 10394630 (+)
G98060 NA non-coding upstream 314571 9878459 ~ 9879136 (+)
G97999 NA non-coding upstream 487671 9705724 ~ 9706036 (+)
G97998 NA non-coding upstream 490598 9702836 ~ 9703109 (+)
G97989 NA non-coding upstream 535841 9655468 ~ 9657866 (+)
G97777 NA non-coding upstream 846463 9345762 ~ 9347244 (+)
G98195 NA non-coding downstream 755 10196627 ~ 10197404 (+)
G98255 NA non-coding downstream 127386 10323258 ~ 10323970 (+)
G98244 LOC106578020 non-coding downstream 143236 10339108 ~ 10340845 (+)
G98277 NA non-coding downstream 169510 10365382 ~ 10365647 (+)
G98282 NA non-coding downstream 182735 10378607 ~ 10379031 (+)
G98093 NA other upstream 107195 10085428 ~ 10086512 (+)
AMCG00015475 NA other upstream 180819 10001214 ~ 10012888 (+)
AMCG00015464 NA other upstream 262861 9929592 ~ 9930846 (+)
G98053 NA other upstream 321702 9815718 ~ 9872005 (+)
AMCG00015492 NA other downstream 17129 10213001 ~ 10222496 (+)
G98251 NA other downstream 121036 10316908 ~ 10317325 (+)
AMCG00015504 NA other downstream 216015 10411887 ~ 10418700 (+)
G98302 NA other downstream 252294 10448166 ~ 10450663 (+)
G98402 NA other downstream 540107 10735979 ~ 10741133 (+)

Expression


Co-expression Network