AMCG00015492


Basic Information

Item Value
gene id AMCG00015492
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10213001 ~ 10222496 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015492
ATGTCGGTGGAGGAGCGGCTGCGGCGGCTGGAGCAGCTGGTGGCGGGCGGGCCGAGCCGGCAGGCGGAGGTGCTGAGCGTCGAGACGCTGCTGGACCTGCTGCTGTGTCTGCACCTGGAATGCGGCGCCACCCCCGCGCTGCGCCGCGAGAAAAACGTGCAGGAGTTCCTGGAGCGGAaGGAGGAGTTTGCCGTGCCCGAGCCCCAGCTCAACAGCCACAGGCAGCTGCAGCGCACAAAGACCAAGAGGAAATTCAACTTCCGCATCTCTGAGGAGCAGAGAGCCGAGCAGCGCAGggTGATGATGAGAAACCCCTCTTTGCGCTCTAAGCTCATCTCCAACCCCACCAACTTCAGCCACCTGGTCCATGTGGGGCCGGGCGAGGGGGTACAGAGCGTGCAGGGGGACCCCCGGGCCGTCCCTGCCTCTGCCCCGGCCCCCCACCGCCCCCGCAGTGCCACCGAGTCTCAGCGCCCCCTGTCTGCAGAGATGCAGAGACTCCGAGACCTGCACAGTGAGAGCCTGGACTATTAG
>TU122488
GTAGACTTTCAGGTAAAGttggaaaaagagagagagagacgggcagGAAAGGCAGGAAAGGAAGAACAAGGGAGGGATGGCAGAAGGCGAGGGCAGCAGTGTTCGGGCCGGATAGACGAAAGAGAAAGCAGAGAAAACCAGGAGCTGTGCCCCTTCAATCACAAATATCAACAATAAGCCAAAGAAAGCTGCCAGGGCAGAACAGGAATACAACTGAACTGCACCGCGGCGAGGCGCAGGGAGAGACACTTTATTTTGGGAGGCTCGGTCAACATGGGCAGCGCCAGCATTGCGCCTCTCACCCCGGCTTAGCCGACCACGACACGGGAGGAACCCGCACCGAGACACCGCCGGCCCCGGGGACACGACTGCTGCATGCCAGCCGCGGGTACGGGGCggggggcgagagagagaggagcggGGGGCAACACAGGCAGAAAGCGGGGGCAGAGACGGGAGAGGGCGGGGGGAGAGGAACTCCTTTTTGCAAGACAATGTCTAGTCCCAGGTCTGCCTGACACATGCAAACACGAAAcgttttagtcttttttttttaattcgaCTTATTGTTGTTATCCGCAAAGCCGAGCCACCGGCAGCGAGTGACGTTTGGATTGCAATTAAAGTAATTGAGGCTCATTAGTATTCCGGCGGCCTTCAGAGAGGGGTACCGCCAAGCGCCAACACTGCCACTTCACCCGCGGGGACCAGCGACTATCCGGGACTCTTTGATGCCTGAGTTGGGCGGCCCGGTGGCTTGGAGTTGGTCGATGGTCCCATTGTCGAGCCAGAAGGATCTCTGAGAGCCGAGAGCGCCTCATCCACTGCCCGTTCACGTCCGCACTCCCACTGCAAGTTGGGTGTTTCTGGTGGTGCGATGTCGGTGGAGGAGCGGCTGCGGCGGCTGGAGCAGCTGGTGGCGGGCGGGCCGAGCCGGCAGGCGGAGGTGCTGAGCGTCGAGACGCTGCTGGACCTGCTGCTGTGTCTGCACCTGGAATGCGGCGCCACCCCCGCGCTGCGCCGCGAGAAAAACGTGCAGGAGTTCCTGGAGCGGAGTCAGCCCTTCGTGTCTCGGGTTCGAGAGCTCAGGCTGCGCAGAGATGACTTTGACATCCTGAAGGTCATTGGTAGAGGAGCATTCGGGGAGGTgagact
>TU122489
GCACTGAATAGACACTTTACACTTTTGGTAtgtgactgtgttgtgttgttgtgtggaGGCGTAGTTGCCGTGTGTTGGTGagtgactgtgctgtgttgttgtgtagaGGAGGAGTTTGCCGTGCCCGAGCCCCAGCTCAACAGCCACAGGCAGCTGCAGCGCACAAAGACCAAGAGGAAATTCAACTTCCGCATCTCTGAGGAGCAGAGAGCCGAGCAGCGCAGggTGATGATGAGAAACCCCTCTTTGCGCTCTAAGCTCATCTCCAACCCCACCAACTTCAGCCACCTGGTCCATGTGGGGCCGGGCGAGGGGGTACAGAGCGTGCAGGGGGACCCCCGGGCCGTCCCTGCCTCTGCCCCGGCCCCCCACCGCCCCCGCAGTGCCACCGAGTCTCAGCGCCCCCTGTCTGCAGAGATGCAGAGACTCCGAGACCTGCACATGAAGCGCCAGTCTCGTGGGTCTCTCTCCGACGAACTTCTCACTGAATAAGACCCAGTGAAGTGAGAAATGGGGAGGGGTGGGTGGTTGAGGGGTAGTGGGGGCAGAGGCAGAAGTTAAATTGGTACCAAAGAGAAGCCCACTGCTCCCACCCAACCCTGCTGACAGAACCGGACCAGGCACTGGACCACAGAACCCCCCCCAATGCACACCTTCACTCTCTCTGAAATAGCTGTAGCTGCACTTCCCCTCTCTGACCACAGGGAGGAGGGCAGGGCACCCAGATCTCCCAGTAGGTCCCTGAGATGGATCAATCAGTGCCCATCTTCAGTCGGGGGATCTCCCATTATACCCGCTCTGCCTGGTCCCCAACGCTGCGCAGAACCACAGCATAAGCTGAATTCGAAACGGGTTCTTCCGTGTCACTACTGACCTGTGtttcattttagtgtattttttaaaccactttttaaatttattatcatttattttatgttgatgaTCATTTAGAGTTCTTGTGATGCTTGATTTTAAATTTAGGATATTTAACAAACCTAACCAAAACATGGCAAAGTGCAATGCTGTGAAGAGCAGGGATGTTACTGCTGGACACCAGACACTGGACATTGGCTGCTGAAAGAACAGAGGAAGAATCCCAGACCAAAAATGGGGTGTATTTTTCATACGTCATAGAAATGTGCCGCCCTGGTCTCTTCCATGTGCCCAAGCAGACCACTCTCGTACGTTTAGATCCCCTGGGACGCATTTTGAAACCTCTTTTAGTCTGTCAGCCCTGCGTTAGTTTCGCAGGTTGAGAATGTATCGTAGAAACCTGACCTGAGATGGTTTACAGActgaagtatatttaaaatgcgtCCCTTGGATTTAAAACGTTTGGAACAAAGGGAGGAGGGAGCTCTGAGAGAGCCAACCCAAGGCAGCGAGGGAACAAAAATGTCCACCATTATGTAATCAGGACTTCAGTCATGGCGCAGTGCCTCAAACCCACTGCTTTTAGGAATCAGCTGTTACGTCATCTCTCTACCCGGGCCGAGGACATCGCGTACGTCTGCGGCACTGGCTGCGGTAGTTCTTGGGGATAATATCACGTGCCGTCTCAGGAATGTATATTGTGACTTGTCAGGGACCGCTCGGGTGTGTGCTGGAAAATCGAATGTTCTCTTCTGTTTGTCATCTTTGTAAGAGACTGCCGGCCCTGGCTGGGTggactttctttttattttcatgtattttttattttgcattcgtGGTACGCCTTGCTGCAATCCCAACCCCAAGGGCCCCCCAGGGAACTACTGCTCCACTGTGACTTCATCCAGGGTCGGGGGGGTTGCCTGGGGGTTGTTACATCATGGGGCCGTGAGTTTCCTTGGGGAGGAGGGGTTGCCTGCACTGTGGGAGGTATCGCTCTTTCTGTCGCTACGGGTTACCACTGTTTATAACAGTTGACTGTTAAAGGTCACCTTCTTggcctctctctcactcaatATTCATATGATTTATGCTCAAGTCTTGATTCCTTgagaggggggggggtagtgttgcacccccaccccacctgcCACAGCCTTTGAGCCCTGCCAAGGCCGTGATGTCACACAGTGGTCCCATTGGTCTTCTGCCAGGGGGTCAAGTGGCACAGCAGGGTCATGGCCACATCCCCTAGGCCCCCACAGAAGCCACCAGGGaagccaaatgtaaaacagccaGAATTAAATATTCTGTACTGTTTTCTTGTGTTAGTCTTACAGTAAGAAAATGTTTAGATATCTAAATGTTTGGCTAACTAATGATATAGATCAAATTGAAACACTTTCTCTGGTTCAATAAGGCTGATACACACCTATAAGACTCAGGACTCCGCTGACTTGGGGATCAGTGTTTATAGCCTGAtggtaaaatactaaaatattgtttttttttaaataaatttgtatatgtttttagatACTGTATTTTCTCAAGCAACTGTGTGGGTATAGGTGAGAAATatattgtgctgtgtgtgcgtgtcacgaacacacacacaattatatgtGATGTTCTCTGTATATAAACTGATTGGATCAATGTTACAGGCCGGTAGGCGGCTATAAGAGCCTATGGGCTacatatcatataaatataaattatcatCGGGAAATGCTTTAACTGCAATTTAACTGGCAAGAGAATCCCCTTtaacaaacgcacacacacatccacacataCTCTAAAACGCAcagtcacatacacacacacactctcacagtcacacagacacaattacACACTCTCACAGGTTGGTTGAATGTTGTGCAAAAATTGTGTGGGTAGGGGCTATAGAAATCCACTGGAGTTCCTTATTTGTTCCTAACTTGGCCAGGAAGTTGGCATGGGACGTGTAGACGTGCACAATGTCTGTTCCTCTCTGCCCTGCTGTCCTGTGAGCTGCTCAGAGCATTGCTGTTCCAATGATGTGTCAATCATAGGCTGCACTGCGGGCATCACACCAGCTACATTGTGGcagcagttgttgttgttgttgttgttgtagttgtagtagtagtagaagttgTAGTTACAGTAGTATTGGTACACAACAGAGACTGCATggtacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatatgtgtgggGAACTGTGCCAAAGCTTCACACAACACATTACTCTACCAAAGAGCTGTGTATGTTTTggactgttttgtgttttaatacacacatataaatatataagataTACTTAGTgtggggtttaaaaaaaaatatatatacatattataatgtttcatacattttatatctatttatgaGATGTCGTTGCAGCTCTATTTTTGTAACATGTTGATCTGAAATGCGTGTCCTTGTAGTTTTAGTCATGATGATGATGCTGGTGATTATTGCTCCTGTGCTGTTAATAGGACGTGTCTGTGGCTGTGTTATGGGCTGGGGGTCTGCTGTTAAAACTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015492 False 534 mRNA 0.66 3 10213878 10219152
TU122488 False 1155 TUCP 0.59 2 10213001 10217201
TU122489 True 3450 lncRNA 0.47 4 10218554 10222496

Neighbor

gene id symbol gene type direction distance location
AMCG00015489 zbtb3,LOC107723820,LOC107602571 coding upstream 17129 10193707 ~ 10195872 (+)
AMCG00015482 NA coding upstream 24463 10179824 ~ 10188538 (+)
AMCG00015481 LOC104949171 coding upstream 36880 10167627 ~ 10176121 (+)
AMCG00015480 NA coding upstream 51233 10158828 ~ 10161768 (+)
AMCG00015483 NA coding upstream 113827 10095089 ~ 10099174 (+)
AMCG00015490 NA coding downstream 5555 10228051 ~ 10228836 (+)
AMCG00015488 NA coding downstream 41526 10264022 ~ 10264459 (+)
AMCG00015491 NA coding downstream 54944 10277440 ~ 10289390 (+)
AMCG00015498 NA coding downstream 81243 10303739 ~ 10305772 (+)
AMCG00015503 NA coding downstream 167797 10390293 ~ 10394630 (+)
G98195 NA non-coding upstream 15597 10196627 ~ 10197404 (+)
G98060 NA non-coding upstream 333865 9878459 ~ 9879136 (+)
G97999 NA non-coding upstream 506965 9705724 ~ 9706036 (+)
G97998 NA non-coding upstream 509892 9702836 ~ 9703109 (+)
G97989 NA non-coding upstream 555135 9655468 ~ 9657866 (+)
G98255 NA non-coding downstream 100762 10323258 ~ 10323970 (+)
G98244 LOC106578020 non-coding downstream 116612 10339108 ~ 10340845 (+)
G98277 NA non-coding downstream 142886 10365382 ~ 10365647 (+)
G98282 NA non-coding downstream 156111 10378607 ~ 10379031 (+)
G98299 NA non-coding downstream 206089 10428585 ~ 10432044 (+)
G98093 NA other upstream 126489 10085428 ~ 10086512 (+)
AMCG00015475 NA other upstream 200113 10001214 ~ 10012888 (+)
AMCG00015464 NA other upstream 282155 9929592 ~ 9930846 (+)
G98053 NA other upstream 340996 9815718 ~ 9872005 (+)
AMCG00015456 NA other upstream 350865 9851672 ~ 9862136 (+)
G98251 NA other downstream 94412 10316908 ~ 10317325 (+)
AMCG00015504 NA other downstream 189391 10411887 ~ 10418700 (+)
G98302 NA other downstream 225670 10448166 ~ 10450663 (+)
G98402 NA other downstream 513483 10735979 ~ 10741133 (+)
AMCG00015528 NA other downstream 650174 10872670 ~ 11227821 (+)

Expression


Co-expression Network