AMCG00015497


Basic Information

Item Value
gene id AMCG00015497
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10188842 ~ 10193858 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015497
ATGTGGAAGAAGGGGCTGCAGGAGGCCAGGACAGCACGGTGGGCCAGGAAGCGGCAGGAGCCGACCAGCACGGTGCAGTCGCACAGGAAGCCCTGTCTCCGCTGGTCCCGCAGCCCCCGCAGGAGCTGCCGGCTGTGGTGGGGGAACTCCATCAGACGGGGgagtggagagagagtgtggggaGGGGGCCtgggggaaagagggagaggtggggagggagggagtgggaaGAGCTTTGGGGgaggggtggagagggagagtgtgggGGGAGACAGGCAGGTGGAGGGAGGAAGGAATAAGGGGGAGGGGCAGGAGGATGACGCCCAGCGCTCACGCTCTCCGTCACTTGTTTCTCGTCTCCTTGCTGGCGTGGAGGGAgtccctcactctctcttgGCCAAGGAGGAGCATAATCGCTGGGATGGATCGGAGGGCACAGCGATGGGAGAGCACCTGCAGATGCTAGTCTGCATGTATGACACCGATGATGGAGATGGCAACGTACCGTGCAAGTGCCCAGGtccgcactctctctctctgtgccggCGTCTTATCCGTGCCCGGTGCCCGGTGCCCGGTACCCGGCTGCCCGCTGCGCTCTGCCCGCGCTCCGGCTTTCTTCCTTTGCCCCTCACTGAGACGGCCTCCCTCGCCGCCAATGCTGACGGGACCCCGGTGCAGTTGCTCCAGCGCTCGGACGCTCCACCTGGCAGCTCCCTCCCcgtctcctccttctccctgcGCCCTCACGCCGTCGCACCGGCTGTCGCCCCCATAACAATAAGCAGCGCCGCAGCCTCTCCGACACGACGCAGCCGTCTCCGCTCCTGCTCCGAGCACAATACAGCACTGCCCCGGCCCGCCCCGTCGCCACTCGCCGGCCGCCGATTGCACCGACGCGACAGTGGATCCTTGGCCGGCGCCTGCTGTCCGTCACCGCTGGCGTCGCCAATCCGCGGCCCGCTCTTCCCGCAGGGCGAGCTGGGAGTTGTAGTTCTTGGGAGgCGTGCCGCCCCCGAGCACCTGTCAGCCAGGGGGAagatggagggaggaggaggaagagggagagggagaaagaggcaCAGTCACCGCAGGTCTGAGGAGTTCCGCTCCTACTCATTGGATGACGTGCAGAGGGTGGTGGCCACCAATGACAAGCAGCGCTTCAAGCTCCACCCCCACCCGGAGGACGGGCGGCTCCAGATCCGAGCCAATCAGGGCCACTCTGTGCAGGTGGCTGGCCTGGAGTTGACCCCAGTGACCCCCGGCCCCGGCGCCCCACCCAGCGCGGTGCATGGCACGTTCCTGCGCCACTGGGCCTCCATTCGAGCTCGGGGCCTGAGCCGCATGGCCCGCACACACATCCACCTAGCACCCGGGCTGCCCGGCAAGGAAGGGGTCATCAGCGgtgaggagggtgggAGTGAGCAGTATCAATCGATGCATACAGGCTATTAGAGTAAGCCCACTGTGCTGCTATCACAGTATGACAGGGGCCCGGTGCCGTACTCTGCCTGGACACCAGGGGGCACCATAGCATACCTTGGCACTTACCATGTTCATTTCCACCCTCCCTTCCCTCGCAGAGTGTGAGCTTCCTCTGGACTAGAGGCGGTGGAGCTGACCTGCAATCAGCTGACCACACCCACAAGGGATGCAAGGAACTGCCATGGGCCCCATGGAGACTTGTTGCAGTGGGAGGAGCCTCCACTTGACCTGCTACAGGGAGTGGCTGATCAGACTGCttccacacagagagagagaggatttgTAAAAATCACTGTGTGTATAACGTGTGTATTGATATGTTCATTAAATTAGACCACTGGAT
>TU122506
TCCGTCACCGCTGGCGTCGCCAATCCGCGGCCCGCTCTTCCCGCAGGGCGAGCTGGGAGTTGTAGTTCTTGGGAGgCGTGCCGCCCCCGAGCACCTGTCAGCCAGGGGGAagatggagggaggaggaggaagagggagagggagaaagaggcaCAGTCACCGCAGGTCTGAGGAGGGCCCTGATGTCCGTCTGTCCAAAGCTCTGTCCTTTGCGCTGCGTCACGGGGCGTCCCAGATGGGGCTGGACATGAGAGCAGACGGATTCGTATTGGTGGAGGACCTACTGTCACACCCCCAGTTCCGCTCCTACTCATTGGATGACGTGCAGAGGGTGGTGGCCACCAATGACAAGCAGCGCTTCAAGCTCCACCCCCACCCGGAGGACGGGCGGCTCCAGATCCGAGCCAATCAGGGCCACTCTGTGCAGGTGGCTGGCCTGGAGTTGACCCCAGTGACCCCCGGCCCCGGCGCCCCACCCAGCGCGGTGCATGGCACGTTCCTGCGCCACTGGGCCTCCATTCGAGCTCGGGGCCTGAGCCGCATGGCCCGCACACACATCCACCTAGCACCCGGGCTGCCCGGCAAGGAAGGGGTCATCAGCGg

Function

GO: NA

KEGG:

id description
K10669 TRPT1, TPT1; 2'-phosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015497 True 1831 mRNA 0.64 8 10188842 10193858
TU122506 False 603 TUCP 0.66 5 10190421 10192287

Neighbor

gene id symbol gene type direction distance location
AMCG00015487 NA coding downstream 60631 10121999 ~ 10128211 (-)
AMCG00015485 NA coding downstream 77658 10110395 ~ 10111184 (-)
AMCG00015486 NA coding downstream 88213 10083788 ~ 10100629 (-)
AMCG00015478 NA coding downstream 184582 10003136 ~ 10004260 (-)
AMCG00015477 NA coding downstream 185754 9997063 ~ 10003088 (-)
AMCG00015495 NA coding upstream 6922 10200780 ~ 10211282 (-)
AMCG00015496 NA coding upstream 59834 10253692 ~ 10259089 (-)
AMCG00015494 NA coding upstream 74081 10267939 ~ 10270312 (-)
AMCG00015499 NA coding upstream 104185 10298043 ~ 10334137 (-)
AMCG00015500 zdhhc24 coding upstream 159351 10353209 ~ 10355965 (-)
G98211 NA non-coding downstream 23445 10107233 ~ 10165397 (-)
G98163 NA non-coding downstream 112949 10026114 ~ 10075893 (-)
G98126 NA non-coding downstream 170973 9929562 ~ 10017869 (-)
G98138 NA non-coding downstream 250520 9937076 ~ 9938322 (-)
G98012 NA non-coding downstream 482811 9705727 ~ 9706031 (-)
G98314 NA non-coding upstream 295721 10489579 ~ 10493106 (-)
G98399 NA non-coding upstream 514563 10708421 ~ 10708752 (-)
G98510 NA non-coding upstream 949660 11143518 ~ 11149864 (-)
G98591 NA non-coding upstream 1353777 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 2252140 12445998 ~ 12446953 (-)
AMCG00015479 NA other downstream 162823 10018764 ~ 10026019 (-)
AMCG00015468 NA other downstream 202214 9973956 ~ 9986628 (-)
AMCG00015471 NA other downstream 292330 9878459 ~ 9896512 (-)
G98094 NA other downstream 349332 9837502 ~ 9839510 (-)
AMCG00015460 NA other downstream 373376 9808818 ~ 9815466 (-)
AMCG00015493 zbtb3,LOC107602571 other upstream 1706 10195564 ~ 10198654 (-)
G98269 taf6l other upstream 94168 10288026 ~ 10340868 (-)
AMCG00015501 NA other upstream 184427 10378285 ~ 10385379 (-)
AMCG00015519 zmp:0000001168,sipa1,LOC108430456 other upstream 461327 10655185 ~ 10704395 (-)
AMCG00015524 NA other upstream 649827 10843685 ~ 10849421 (-)

Expression


Co-expression Network