AMCG00015503


Basic Information

Item Value
gene id AMCG00015503
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10390293 ~ 10394630 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015503
CGCGGGGTTCACGCATGGCTCTGAAGGGCGGCGTGCGTGGACGCTGCGTGGGCCATGGGAGTCGGGAAGCGGGACATGCAGGGAAGAGGCGGGCGGGATGGGTTTAAGGAATCCGATTGGGAATTTGCATGCACACGACTGGCAAAGCCCATCTCCTGATGAGACCACAATCCGAAATACACGGGGAAACGCGATTCAACATTGTGTTTGTTGATTTTCGatcaaatacttaaaaaaaatcatagaaatacatatatcaaCCAAGTTACTATTATTCATAGACCGAGTTGTAGGATACCGCATTTCAATCACGCAGGCTAGTTATGGGTATAGctatataatattgcatttgatGGGTTCTGCGAGGAAATTGATAGTGGGCTGATAACGACGCTCATTACCCCTGAGCTGCTTAAGTGTTCACCTGCTAATACTACTACTAGCCTacaaataatcatcatcatcagccatacatacatagacaccGCACTGTGTGTTTGCACGCCTGCTAATGTATCGAGCAGATCACGTCCAGAGACGCAGCAGCGGCCTGTCACCTGACCTCTTGTGGCCAAAACCCACAGCGCGCCCGGCCGCGGCGCTCCTGCAGCCTGATGGCCAAAGACTACCTTTCCCAGAAGTCATCGCGAACAAACAACTTCCGGCGCCAGGAGATGACGCGCTGTTGTCATTTCAAGAAGCAGCGCGGCAAAGGATGTCTGGCAGCGGAGTGGTGCGAGTGGAGCTGGGAGGTGTCTCCCGGGCGGACAAGGAGCCCATCCACCTCCTGCCCTGCGAGATCGAGCACGACGGCCAGGCCAGCGTCAGCCGCTACTTCACCCCCGCCATCAGGGAGAGTAAGAGTGAGATGAACACCACGTTCCGAGGGCGTGGCCTCAAAGGTCAGGAGGTCAGGTGTCCACCGGGCTACTCCGGCCTCGTGTTTAAAGAGGACCACAAGCCTGTCTCGGAAGAGGAGGAGAGGTCGCTGAGAGTCAGGTCTGTCTTCAGCAAAATCACCTACTGGAACCTGGAGACTCCGCCCTCCTCCGATGACGGCGTGGTCATGGCGATGAGCTGGCCGGCCATCGCAGAAGCGATCCACGGGCCTGTTGAGTAAGAGACGCCCTACAGAACTGACTGCACACAGCAGCAGAAGACCGttaaccccccacctccctacACACACTGGTGTGTTGTGCATTTAAACAGCCTTGTATTGATATGCATATAGCAGATTTCTCCCcagtacttttttttattcctttttaaatgtagtcCCTCTCAGAAACTGCGTCTTGAGTCAATTCTGATTTACTCCATTTGTGAGGCATGTAAATGGGAGCTGCTGCTGCAATGGGTGTTGTATCCAGTCTGCCACAGGAGGCCTAAGCAGAAAACTGTCTGATCTGTTGCAGAGAGCGAGCGCTGATGATCTGGGGTGAAACCAGCAGAATCTTTTACTACAGTGAGATTAATCTCAAGGGCCTCCACGGTCAGGTAGATTTGCCTGTCTGGTGTGTAACTAGCAGAAACTCCCCCCCGTCACTTTACTGTTTTCTATAATACCATCCTCTAGGCATCACCTCTGTAatgtttttgagtttttttttctttcttttaaataaatatggtaGCTCTCCCCCATTCCTGTAAATAAGACTCAAACTCAAACTCAGGGTGGGTGGCTCGGCCCAGTCCTGCCACAACCGCCTGGGGTCCTTTAGTGCAGGAGCTGGTGGAAAGCTGTCTCAGCCGGACGtgtcaagggaggaggcaggTTGTTTGCAAACAGAGGCCAAGCCAAGCTGTGCGTCACCTTCATCtcactgattaaaataaatcttataaAAACCTTGGTTATCTACTTAAAATGTGAGAGCTGTACCTTTTACACAACTACTGCCTGCTGAAGGTGGGAGGGAGGGCTTCACAATGACGACTCCTACAGGGagtgcaatacaaaaatatgcttCCAGTGCAAAAGTAGGGtgtgatgtcatgttttattaaaaggcATGCTATATTTTGaggtgtttttgctttttcttaaaaaaaagttatttctgatatttttataAACCAATAATTCACGCTTCattatatcaaaaacaaaactgtacagaTCACTAAAATTTACATTCTTGTAACAGTTCcacatggcttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
K10745 RNASEH2C; ribonuclease H2 subunit C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015503 True 2185 mRNA 0.48 5 10390293 10394630

Neighbor

gene id symbol gene type direction distance location
AMCG00015498 NA coding upstream 84521 10303739 ~ 10305772 (+)
AMCG00015491 NA coding upstream 100903 10277440 ~ 10289390 (+)
AMCG00015488 NA coding upstream 125834 10264022 ~ 10264459 (+)
AMCG00015490 NA coding upstream 161457 10228051 ~ 10228836 (+)
AMCG00015489 zbtb3,LOC107723820,LOC107602571 coding upstream 194421 10193707 ~ 10195872 (+)
AMCG00015502 NA coding downstream 41221 10435851 ~ 10443627 (+)
AMCG00015505 LOC103385808,LOC107690779,LOC103366237,LOC103033313,LOC102208922 coding downstream 90312 10484942 ~ 10489317 (+)
AMCG00015512 NA coding downstream 118005 10512635 ~ 10517039 (+)
AMCG00015509 NA coding downstream 145290 10539920 ~ 10541947 (+)
AMCG00015511 NA coding downstream 148632 10543262 ~ 10546764 (+)
G98282 NA non-coding upstream 11262 10378607 ~ 10379031 (+)
G98277 NA non-coding upstream 24646 10365382 ~ 10365647 (+)
G98244 LOC106578020 non-coding upstream 49448 10339108 ~ 10340845 (+)
G98255 NA non-coding upstream 66323 10323258 ~ 10323970 (+)
G98195 NA non-coding upstream 192889 10196627 ~ 10197404 (+)
G98299 NA non-coding downstream 33955 10428585 ~ 10432044 (+)
G98310 NA non-coding downstream 95278 10489908 ~ 10493701 (+)
G98311 NA non-coding downstream 99894 10494524 ~ 10494951 (+)
G98312 NA non-coding downstream 102206 10496836 ~ 10497062 (+)
G98338 NA non-coding downstream 135330 10529960 ~ 10571890 (+)
G98251 NA other upstream 72968 10316908 ~ 10317325 (+)
AMCG00015492 NA other upstream 167797 10213001 ~ 10222496 (+)
G98093 NA other upstream 303781 10085428 ~ 10086512 (+)
AMCG00015475 NA other upstream 377405 10001214 ~ 10012888 (+)
AMCG00015464 NA other upstream 459447 9929592 ~ 9930846 (+)
AMCG00015504 NA other downstream 17257 10411887 ~ 10418700 (+)
G98302 NA other downstream 53536 10448166 ~ 10450663 (+)
G98402 NA other downstream 341349 10735979 ~ 10741133 (+)
AMCG00015528 NA other downstream 478040 10872670 ~ 11227821 (+)
AMCG00015539 NA other downstream 664860 11059490 ~ 11066855 (+)

Expression


Co-expression Network