AMCG00015504


Basic Information

Item Value
gene id AMCG00015504
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10411887 ~ 10418700 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015504
ATGCGCTGCAATTCCACGACACGCCGCACACCCTGCGCCCTGGGCTCACTCACCAGATATGACGAGACGGCGGTTACGACGGACTGGCAGAAGAAGCTAACCCCGGAGCAGTACGTGGTGACCAGGGAGAAGGGCACCGAGCTGCCCTTCACTGGCATCTACTTGAACAACACTGAGCCCGGAATGTACCATTGTGTTTGCTGCGACACACCTCTGTTCAGTTCAGAAGCTAAATACAATTCGGGCACCGGGTGGCCCTCGTTCACCCAGCCGCACGGCTCATGCGGCACCGACGAAGAGGGCACCAACATACTGCGGCGCCCTGACAACTCACTGGGCTGCACCGGGACAGAAGTCATCTGCAGGAAGtGCGATGCCCACCTCGGCCATGTGTTCGACGACGGACCACCACCCACAGGCCAACGCTTCTGCATAAACAGCGTGGCTCTGACCTTCAAGCCCAGTCCAAAATAG
>TU122603
GCCGCTGTCACCAGTCCGAGCAGCCGGGTTGACAGCCGGGACCGAGCCGACACAAGTGCAGGCGTTTCAGCACCGACAACATGGCCCGTTTTCTCTCCCGATTGCCGTCTCTTCTGATTAGAGAGGTGACACCCAAAGCAGTGCGGACTAAGAGCTTCAGATCGATCCGCCGTCCCATTTTCACCAATTCTGCCCTGGGCTCACTCACCAGATATGACGAGACGGCGGTTACGACGGACTGGCAGAAGAAGCTAACCCCGGAGCAGTACGTGGTGACCAGGGAGAAGGGCACCGAGCTGTTCAGAAGCTAAATACAATTCGGGCACCGGGTGGCCCTCGTTCACCCAGCCGCACGGCTCATGCGGCACCGACGAAGAGGGCACCAACATACTGCGGCGCCCTGACAACTCACTGGGCTGCACCGGGACAGAAGTCATCTGCAGGAAGtGCGATGCCCACCTCGGCCATGTGTTCGACGACGGACCACCACCCACAGGCCAACGCTTCTGCATAAACAGCGTGGCTCTGACCTTCAAGCCCAGTCCAAAATAGACCAGACCCCACAAACACCTCCCCTCCATCTTTAACAAGAAACAACCACACCCGCACAGATGTAAACTGAGCATGCTGTCGAGTATTCCAGGGGCCAAAAAACCCCACTGATCAACACCAGCATTTGTTACCTAGCACAACACTGGGGGACTGTGATTTTCATTGGCTGGCTGTGTTCACATGCTAGTGAATACCTCATGACAGTAGAGGTCCTGTCCTGATTTATTTAAGGTAGTCTGGGCTGGTTACAGTCTTGGTTTATGTTCAAATTCAAAACTCGGAACAACCACACGCAGAGTTGCAAAGCAGCAACTGTTGGAAGAATACAGTAACACCCCCAAAACACTCTCAAACTACAGTCCAGCCGTACCACCTTAAGAGAAGCTCTGACACGACCGCTACTGTCATGACTTTTCACATGCATGCCAACGAAGCccgtcttgtttgtttttgtattgttaaatgtCAGTCCTGTCCTCGACAGAGGTGTGCGATGTCTCCTTGGCTAGACGGTTGACAGCTGTATGTTTACATTGACAAGTCAAGTTTATGTTTTAGGAAAATGTCGCTGTTGACGTTTTTCAAGCTATCGTAGTTTCATGTTTTAGGGAGTCAAATATTTGTTGAAAGCCATGTCTATTGATACACACTGAGTTGTTGTTATGATTTTTGGGGCAGATACTGTGCTTTCTTAACTGTGTTAATCTGTCTGTATTGAACAGCATCTGTCCCACTTCATAGAAGATTGCTGTTGAtctcattaatattaaaatactatttacattttcttccttgCAACAAATACTGGacttgaattattattgttgaaacCCATTACTCTGTGTGAAGGGTATGAATAAATTCAAATTCCACTGGATTAGATTAGAGACTGGACCACCAAAGAGAAAGGAGTTGGGCCACAGTCAATGGGGCAGAGACGTTCTGCGCAATGTCCTCCAGGCAGACTGTGCCGCAGCGGCCAGACGAGATGTGGGTGAAGGCCAAACTCTGAAATACagaattgtaaatatatagatGTTATTACAGACTGTGATTTGATGTCACTGTTCAACATTTCTGTGCCTGTGTTCAAGTTCCTGCAttcaataaacatattttagacATTGTGCAACTTGATTACTTAGATATTTTGTAGAAAGCACACTTCAGTTGtctattgtgtgtatgtgtgtttctttctgtaactgcaaacattgatcttaataaataaaatgaggtGTAGAGAAC

Function

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030041 actin filament polymerization biological_process
GO:0030091 protein repair biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0033743 peptide-methionine (R)-S-oxide reductase activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015504 False 474 mRNA 0.59 5 10413326 10417452
TU122603 True 1800 lncRNA 0.47 4 10411887 10418700

Neighbor

gene id symbol gene type direction distance location
AMCG00015503 NA coding upstream 17257 10390293 ~ 10394630 (+)
AMCG00015498 NA coding upstream 106115 10303739 ~ 10305772 (+)
AMCG00015491 NA coding upstream 122497 10277440 ~ 10289390 (+)
AMCG00015488 NA coding upstream 147428 10264022 ~ 10264459 (+)
AMCG00015490 NA coding upstream 183051 10228051 ~ 10228836 (+)
AMCG00015502 NA coding downstream 17151 10435851 ~ 10443627 (+)
AMCG00015505 LOC103385808,LOC107690779,LOC103366237,LOC103033313,LOC102208922 coding downstream 66242 10484942 ~ 10489317 (+)
AMCG00015512 NA coding downstream 93935 10512635 ~ 10517039 (+)
AMCG00015509 NA coding downstream 121220 10539920 ~ 10541947 (+)
AMCG00015511 NA coding downstream 124562 10543262 ~ 10546764 (+)
G98282 NA non-coding upstream 32856 10378607 ~ 10379031 (+)
G98277 NA non-coding upstream 46240 10365382 ~ 10365647 (+)
G98244 LOC106578020 non-coding upstream 71042 10339108 ~ 10340845 (+)
G98255 NA non-coding upstream 87917 10323258 ~ 10323970 (+)
G98195 NA non-coding upstream 214483 10196627 ~ 10197404 (+)
G98299 NA non-coding downstream 9885 10428585 ~ 10432044 (+)
G98310 NA non-coding downstream 71208 10489908 ~ 10493701 (+)
G98311 NA non-coding downstream 75824 10494524 ~ 10494951 (+)
G98312 NA non-coding downstream 78136 10496836 ~ 10497062 (+)
G98338 NA non-coding downstream 111260 10529960 ~ 10571890 (+)
G98251 NA other upstream 94562 10316908 ~ 10317325 (+)
AMCG00015492 NA other upstream 189391 10213001 ~ 10222496 (+)
G98093 NA other upstream 325375 10085428 ~ 10086512 (+)
AMCG00015475 NA other upstream 398999 10001214 ~ 10012888 (+)
AMCG00015464 NA other upstream 481041 9929592 ~ 9930846 (+)
G98302 NA other downstream 29466 10448166 ~ 10450663 (+)
G98402 NA other downstream 317279 10735979 ~ 10741133 (+)
AMCG00015528 NA other downstream 453970 10872670 ~ 11227821 (+)
AMCG00015539 NA other downstream 640790 11059490 ~ 11066855 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other downstream 939452 11358152 ~ 11416599 (+)

Expression


Co-expression Network