AMCG00015512


Basic Information

Item Value
gene id AMCG00015512
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 10512635 ~ 10517039 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015512
CGAAACTGCGTTGGTAACTGAGCTGGAAAGGCACTGTGAGGTCTGTACAAGAGTTGTATCTGAACGGAGAAAGAGGTGGGATAATTAACGGGGATAATTAGGACGACACGTTTCTAAAAAAGCTCCCAGCGTTTCCATTTCAGCGAGCTGCCAAGGTAGAGCCATGGCATCCATCCCCAAAGTCAAAGAGTTGGAACAATGCTTGAATTTATATCAAATAATGTACCAGGATGCAGGAGTGCTTCATGTGTTGCAAGAACAGTGCATGCTGTACAGTTACAGTCAATGGTCTGTTGTGCAGAGATGGGTGGACTTCAGTAGAAAGGAGGGAGGCCTGGCCCTGACCCAGAGCAACCTGGATCTCTTTGAACGACAGGACCGGGGCACTGACTGGATTCAGTCTTATAATATGTCGGCTATCACAACAGGCAACCTGAGTCACATGAGGCAGGGGTTCTCCTCCAGGTCGTGGATTCCCTGCTTCCTTCACAGTGTGGATCTCTGTGTGGACAAGCTGCTGCTCTTGGACCTGGTGTCAGCGCCTCTCTCACGACTTCGCAAAGTGGTGTCTGCTTTCACCAGGTCCACTCAGTACCGAGAGGCCCTCCTGAAGAAGCAGACAGAGCTGAGTTTGTCCAAAGATCAGCTGATCCTTGACCAACCTAAGAGATGGAGGTCCACTTACAGTATGGTCAACAGATTCCTGGAACAAGAGGAAGTGGTTTCTGCAGTTCTCACTGAGAATGGCAAGAGCCACCTTCTCCTCCAGGAAGCTGAGATCACTGTTTTGAAGGATGTCCACTCTGTCCTGCATCCCCTGTTTGAGCTGATGGAAGCCCTGCTAGTGGAAAAACCCATAATCATGTCTTCGATCCCTCCTGTCCTGTGGAGGATGAATTCCTCAATGTCAGTTGCCGATGGAGACAGTGACCTGGTGAAGCAGATGAAACAGATGATGATGTCTGATCTGAAGAAACAGTATGGCAGTGAATGCCTGCAAACTGTCCTGGACTGCGCCTCGTTCCTAGACCCTCGCTTCAAGAACACCTTCGTCACCGACCCACAGGCCGTGAGGACGGAGCTGATGGGGCAAGTGATGACCCTCCCTCAGCCCCCGACTGCGGGGACCCAGCAGAGCATGGAGCCGGCCCCCTCCTTCTCCAGCTTCAACCCCTCAACCCCTGAACCGCAGGGCAAGAGGCGCAGATCTGACCTGCAGGGCTTGCTCTGTGATATTAAGAACCAGAAGGAGCTGGAGACTCCTACAGGG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A
ko05162 Measles

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015512 True 1270 mRNA 0.52 5 10512635 10517039

Neighbor

gene id symbol gene type direction distance location
AMCG00015505 LOC103385808,LOC107690779,LOC103366237,LOC103033313,LOC102208922 coding upstream 23318 10484942 ~ 10489317 (+)
AMCG00015502 NA coding upstream 69008 10435851 ~ 10443627 (+)
AMCG00015503 NA coding upstream 118005 10390293 ~ 10394630 (+)
AMCG00015498 NA coding upstream 206863 10303739 ~ 10305772 (+)
AMCG00015491 NA coding upstream 223245 10277440 ~ 10289390 (+)
AMCG00015509 NA coding downstream 22881 10539920 ~ 10541947 (+)
AMCG00015511 NA coding downstream 26223 10543262 ~ 10546764 (+)
AMCG00015510 sssca1 coding downstream 30737 10547776 ~ 10553456 (+)
AMCG00015513 NA coding downstream 37627 10554666 ~ 10555449 (+)
AMCG00015517 LOC100380650 coding downstream 50470 10567509 ~ 10604062 (+)
G98312 NA non-coding upstream 15573 10496836 ~ 10497062 (+)
G98311 NA non-coding upstream 17684 10494524 ~ 10494951 (+)
G98310 NA non-coding upstream 18934 10489908 ~ 10493701 (+)
G98299 NA non-coding upstream 80591 10428585 ~ 10432044 (+)
G98282 NA non-coding upstream 133604 10378607 ~ 10379031 (+)
G98338 NA non-coding downstream 12921 10529960 ~ 10571890 (+)
G98398 NA non-coding downstream 191382 10708421 ~ 10708753 (+)
G98422 NA non-coding downstream 302709 10819748 ~ 10820170 (+)
G98430 NA non-coding downstream 407093 10924132 ~ 10938566 (+)
G98442 NA non-coding downstream 471817 10988856 ~ 11019109 (+)
G98302 NA other upstream 61972 10448166 ~ 10450663 (+)
AMCG00015504 NA other upstream 93935 10411887 ~ 10418700 (+)
G98251 NA other upstream 195310 10316908 ~ 10317325 (+)
AMCG00015492 NA other upstream 290139 10213001 ~ 10222496 (+)
G98093 NA other upstream 426123 10085428 ~ 10086512 (+)
G98402 NA other downstream 218940 10735979 ~ 10741133 (+)
AMCG00015528 NA other downstream 355631 10872670 ~ 11227821 (+)
AMCG00015539 NA other downstream 542451 11059490 ~ 11066855 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other downstream 841113 11358152 ~ 11416599 (+)
AMCG00015555 NA other downstream 1917127 12434166 ~ 12462665 (+)

Expression


Co-expression Network