AMCG00015535


Basic Information

Item Value
gene id AMCG00015535
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11185860 ~ 11261168 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015535
ATGCTGAATCCCTACCCAATCTATTCCGCCATTGACAGATGGAGACTAGAGAACAAAGACAAACATGACAAGGgATTGTGTGGCAGTGCCTTAGGAAGCTGGGAGGAGAGCAAGAAATTTATCACATCACTTATCAAAGAGAATGTTCTCCCCAGTGACCTGGTCCAGGATGAGAAGATTTACCTGATCGACGCTGGCCTGGCAATTAACTGTGGCTACCCGCTGGTCCTGAGGCCGGAGAGACAAGTGCAGCTCATCCTGTCCTTCGACTTCAGCGCTGGAGACCCATTCCTGGAATGGGTCTCCAGCGCTGAAGTCGAAGAACAGGATGAGCTGTACTTGTCTCTCTGGCCTCAGGACCAGCGGGTAGCCACAGTTAATAGATCAGGCAATGAGGAGGCACAAAAGCAGTTGCAGCAGGTGCTGGAGAACTGGGACCAGCAGAGCGAGGCAGAGCAAGTGAAGACACTTTCCGACCTCTGCCAGGAAATGTGCTTAAACTACATAGGCAATGACCTGGTCCAGGATGAGAAGATTTACCTGATCGACGCTGGCCTGGCAATTAACTGTGGCTACCCGCTGGTCCTGAGGCCGGAGAGACAAGTGCAGCTCATCCTGTCCTTCGACTTCAGCGCTGGAGACCCATTCCTGGATCCCCTAGGGCCCCTGATATACTGGACCAAGAAACAGAAGTTATTGACCTCTGGTGCAGGTGCCAGGTTTGCCACTTGTATGCTGACCAACAACTGGGTGGATGACTCAGCTCAACGAGAACAAACAGCACAGATGCTGTCCTCTCTCAGCGGACACTTTGATCTGATTGTGGAGTCTTGCCGTGTGGGGATGAGAAAACCAGAGCCCTCCATCTATTCCTACACTCTGGACAAACTGCAGACCAAACCCCAGGATgCCATCTATCTGGATGACATAGGAGCCAACCTGAAGGTTGCTCGCAACATGGGCATGGCCACCATTTGGGTCAGGGACACCAGCAAGGCTTTGAAGGAGCTGCAGACACTTTCAGGAGTGGAGGTAGGACTGCTGAACCCAGAAGAAATGCTTCCCTCTTTCTGCTGTCCTGATGATGTCTCTCATGGGTTTGTATCCATTAAGCCTGGAGTGAAGACCCATTATGTTGAAAAAGGAGATGGGCCCCCTGTACTACTTTGCCATGGATTCCCTGAGTGCTGGTACTCCTGGAGATACCAGATCCCAGCACTGGCAGATGCAGGATTCAGGGTTCTGGCTTTGGACATAAAAGGTTATGGGGAATCGACAGCACCCCCTGaCATAGAGGAGTATTCTCAGGAACAGATTTGCAAGGAGTTGGTGACCTTCATGGATAAAATGgGCATTCCCCAGATTACATTAATTGGCCATGACTGGGGTGGTGCTTTGGTGTGGAATATGGCACAGTACTATCCCGAGAGAGTCCGAGCTGTGGCTTCACTGAACACTCCGCTGCTCCCAGTCCAGCCCGATGTGAATCCTttagaacaaattaaatctcTACCTGCCTTTGATTACCAGCTTTACTTCCAAGAACCTGGTGTGGCTGAAGCAGAATTGGAGAAGAACTTGGAGAGAACCTTCAAACTGATGTTTCTGAGCAGTGAAGATGAGGGTCCAAACAGGCCTCGTATTGATACATCCAATGTCCGCAAGAGAGGGGGCCTGTTTGTGGGAATGCCAGAGAATCCACCCCGAAGTCCAATTCTCACTGAATCAACTCTGCAGTACTATGTCCAACAGTACAAGAAGAGTGGCTTCAGGTAG
>TU122906
NGTCTTCTCTGTACAATGATGAGAAGTGGTCCCTTCAAGTGGAGCAGAAAGAGGCCGAGATGGTTGAGAAACTCACAAGTAAAGAGATTACTTTCCAAGACGAATTCAACAGGATATATGAGGCCGCAAGGGACAGTAACTTCTCTCTGACAGACATCTGGGCTGCCCTGTATGTTTATCCTGTCTTGAGAGATaaagaaacaaagagtgTTTCTGATCAGACAGATAAGGAAATGCTGAATCCCTACCCAATCTATTCCGCCATTGACAGATGGAGACTAGAGAACAAAGACAAACATGACAAGGgAATCTGGTTCGAGATCACCCGCCATGAGTCTGGCTACCCGGGGTGTGGTGCCTTCATAGAAACGTCAAAGTTTGGCAGCATTTTCAAGGAAGGGGAAATCCTTGAGCAGCGGGATGAAATGGACCTGCTGTACCTGAAAGgATTGTGTGGCAGTGCCTTAGGAAGCTGGGAGGAGAGCAAGAAATTTATCACATCACTTATCAAAGGTTGGATTAAGTCCATTCCCGGGTTCAATCGAATGTTACGGGGAAGGGCAACAAATGAATCTGTTTCTACAG
>TU122907
NGTCTTCTCTGTACAATGATGAGAAGTGGTCCCTTCAAGTGGAGCAGAAAGAGGCCGAGATGGTTGAGAAACTCACAAGTAAAGAGATTACTTTCCAAGACGAATTCAACAGGATATATGAGGCCGCAAGGGACAGTAACTTCTCTCTGACAGACATCTGGGCTGCCCTGTATGTTTATCCTGTCTTGAGAGATaaagaaacaaagagtgTTTCTGATCAGACAGATAAGGAAATGCTGAATCCCTACCCAATCTATTCCGCCATTGACAGATGGAGACTAGAGAACAAAGACAAACATGACAAGGgAATCTGGTTCGAGATCACCCGCCATGAGTCTGGCTACCCGGGGTGTGGTGCCTTCATAGAAACGTCAAAGTTTGGCAGCATTTTCAAGGAAGGGGAAATCCTTGAGCAGCGGGATGAAATGGACCTGCTGTACCTGAAAGgATTGTGTGGCAGTGCCTTAGGAAGCTGGGAGGAGAGCAAGAAATTTATCACATCACTTATCAAAGGTTGGATTAAGTCCATTCCCGGGTTCAATCGAATGTTACAGGGAAGGGCAACAAATGAATCTGTTTCTACAG

Function

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0060841 venous blood vessel development biological_process
GO:0004301 epoxide hydrolase activity molecular_function

KEGG:

id description
K08726 EPHX2; soluble epoxide hydrolase / lipid-phosphate phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015535 True 1776 mRNA 0.51 19 11185860 11260595
TU122906 False 585 TUCP 0.45 5 11257278 11261168
TU122907 False 585 TUCP 0.45 5 11233315 11261168

Neighbor

gene id symbol gene type direction distance location
AMCG00015536 NA coding downstream 1970 11179092 ~ 11183890 (-)
AMCG00015533 NA coding downstream 178485 10997549 ~ 11007375 (-)
AMCG00015534 NA coding downstream 190975 10989882 ~ 10994885 (-)
AMCG00015530 NA coding downstream 200650 10977415 ~ 10985210 (-)
AMCG00015531 actn3,LOC101158802 coding downstream 244365 10924861 ~ 10941495 (-)
AMCG00015541 NA coding upstream 10371 11271539 ~ 11322500 (-)
AMCG00015556 NA coding upstream 1201888 12463056 ~ 12469988 (-)
AMCG00015560 NA coding upstream 1220554 12481722 ~ 12507107 (-)
AMCG00015562 NA coding upstream 1312295 12573463 ~ 12574052 (-)
AMCG00015561 NA coding upstream 1362090 12623258 ~ 12640668 (-)
G98510 NA non-coding downstream 35996 11143518 ~ 11149864 (-)
G98399 NA non-coding downstream 477108 10708421 ~ 10708752 (-)
G98314 NA non-coding downstream 692754 10489579 ~ 10493106 (-)
G98216 NA non-coding downstream 963335 10173101 ~ 10222525 (-)
G98211 NA non-coding downstream 1020463 10107233 ~ 10165397 (-)
G98591 NA non-coding upstream 286467 11547635 ~ 11547875 (-)
G98648 NA non-coding upstream 1184830 12445998 ~ 12446953 (-)
G98649 NA non-coding upstream 1186420 12447588 ~ 12447829 (-)
G98650 NA non-coding upstream 1188128 12449296 ~ 12449821 (-)
G98651 pcnx3,LOC107560657,LOC107715400 non-coding upstream 1191194 12452362 ~ 12452577 (-)
AMCG00015524 NA other downstream 336439 10843685 ~ 10849421 (-)
AMCG00015519 zmp:0000001168,sipa1,LOC108430456 other downstream 481465 10655185 ~ 10704395 (-)
AMCG00015501 NA other downstream 800481 10378285 ~ 10385379 (-)
G98269 taf6l other downstream 844992 10288026 ~ 10340868 (-)
AMCG00015493 zbtb3,LOC107602571 other downstream 987206 10195564 ~ 10198654 (-)
AMCG00015540 NA other upstream 71495 11332663 ~ 11345490 (-)
G98543 NA other upstream 92615 11353783 ~ 11386199 (-)
G98546 NA other upstream 153199 11414367 ~ 11416662 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other upstream 1138565 12399733 ~ 12430648 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other upstream 2196959 13458127 ~ 13468822 (-)

Expression


Co-expression Network