AMCG00015539


Basic Information

Item Value
gene id AMCG00015539
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11059490 ~ 11066855 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015539
ATGCCAGGGGGCGCTGctGTTGTCCAGAGGTGCAGGAGCTGTGCTCTGGGCAGTGATTGGACAGTGACTGATGTCGTTGATGTCATTGCCCTAAATGGGGAGGGGTTCCTGAGgctcagtgtgtcagagtggcGCTGGGAGGCTGGCTCTGTTCCTGGAGGAGTTGAGGctgggggatggggggatgcCCAGTCCAGTGGAAACGGCACTTTCCACACCAGACTGGACCGCACCATCAGCCCACTGGACTCGGACTGGTACTACTGCGAGGCCCAGCAAGGGGACATCACAGTTACTGAAACCTGGTGTGAGAGTCTGTACTGCGCCATAGGCGCTGTGGACTGCAAAGATCTGAAGACTTAAAAACGCATTGAAAAGACACGTCAGATAGAACGGAGAGGAAATGGGAGCACAGGGGAGTAGGGTAGAATACCAGACGAAGACGGTGACAGTAACAGTGTATACATGCAGCATGTGTGGCACCACCCTCGACGAGTGTGCTGTGAGCAAACTGGGCAGCAGAGTCTACTGTGGGAACTGCCACCGTCAGGAAATCGAGAGGCAGAAGAAAGAGGCCGCAGACAGAAGCCTGCAGCAATCAAAGCTCACGCAAGATgaagaaaacaggagaaaagAGGGACTGGAAAGGGAACGAATACAAGGTGAACACAGAAGGATTTAGGAGCTCCAGATGTGTCAGAAAAGATAATGTTGTTCTTGCATTTGCCTGCTGTGATGAGCAGTTATTCTTTGTACTAGTCAAAATCCAATGTATAACCATTGTCCTAgaacattgtat
>TU122817
CTGATTCTGTACATTTACAGCCACCTGTGTGTTTCTGACACTTTGCTCTTCTGGGGCCAGAGACGAGGACTGCAAAGATCTGAAGACTTAAAAACGCATTGAAAAGACACGTCAGATAGAACGGAGAGGAAATGGGAGCACAGGGGAGTAGGGTAGAATACCAGACGAAGACGGTGACAGTAACAGTGTATACATGCAGCATGTGTGGCACCACCCTCGACGAGTGTGCTGTGAGCAAACTGGGCAGCAGAGTCTACTGTGGGAACTGCCACCGTCAGGAAATCGAGAGGCAGAAGAAAGAGGCCGCAGACAGAAGCCTGCAGCAATCAAAGCTCACGCAAGATgaagaaaacaggagaaaagAGGGACTGGAAAGGGAACGAATACAAGGTGAACACAGAAGGATTTAGGAGCTCCAGATGTGTCAGAAAAGATAATGTTGTTCTTGCATTTGCCTGCTGTGATGAGCAGTTATTCTTTGTACTAGTCAAAATCCAATGTATAACCATTGTCCTAgaacattgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgaatcagtAGAGTGAATATAATCAATACTGAGTTAACTGCTAGGTTTTCACAAGCAAAACAGAAGTCCAATATTGAAACTGTTATGTAACACCATCCATGATAAACAAATAGTGAAGAAaacaatgtgttatttttttatggaagTCCTTGGTAAATCCTCAATTTTCATCATgtacacaaaaaacagcaaaataaataaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015539 True 799 mRNA 0.52 4 11059490 11066584
TU122817 False 798 TUCP 0.38 2 11064718 11066855

Neighbor

gene id symbol gene type direction distance location
AMCG00015529 NA coding upstream 136960 10911450 ~ 10922530 (+)
AMCG00015520 LOC106560356 coding upstream 286926 10769384 ~ 10772564 (+)
AMCG00015521 NA coding upstream 317085 10739470 ~ 10742405 (+)
AMCG00015522 NA coding upstream 322515 10735359 ~ 10736975 (+)
AMCG00015516 NA coding upstream 433426 10613408 ~ 10626064 (+)
AMCG00015537 NA coding downstream 100432 11167287 ~ 11175559 (+)
AMCG00015538 NA coding downstream 270491 11337346 ~ 11342116 (+)
AMCG00015546 NA coding downstream 285116 11351971 ~ 11354018 (+)
AMCG00015547 NA coding downstream 287216 11354071 ~ 11356899 (+)
AMCG00015545 LOC105903120,LOC108434861,LOC107588129,LOC107753955,LOC107659720,LOC108267459,LOC106577530 coding downstream 299958 11366813 ~ 11370908 (+)
G98442 NA non-coding upstream 40381 10988856 ~ 11019109 (+)
G98430 NA non-coding upstream 120924 10924132 ~ 10938566 (+)
G98422 NA non-coding upstream 239320 10819748 ~ 10820170 (+)
G98398 NA non-coding upstream 350737 10708421 ~ 10708753 (+)
G98338 NA non-coding upstream 487600 10529960 ~ 10571890 (+)
G98569 NA non-coding downstream 399997 11466852 ~ 11468628 (+)
G98590 NA non-coding downstream 480710 11547565 ~ 11547819 (+)
G98625 NA non-coding downstream 1332878 12399733 ~ 12405119 (+)
G98731 NA non-coding downstream 1745621 12812476 ~ 12812692 (+)
G98831 LOC100846954 non-coding downstream 2147015 13213870 ~ 13214646 (+)
G98402 NA other upstream 318357 10735979 ~ 10741133 (+)
G98302 NA other upstream 608827 10448166 ~ 10450663 (+)
AMCG00015504 NA other upstream 640790 10411887 ~ 10418700 (+)
G98251 NA other upstream 742165 10316908 ~ 10317325 (+)
AMCG00015492 NA other upstream 836994 10213001 ~ 10222496 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other downstream 291297 11358152 ~ 11416599 (+)
AMCG00015555 NA other downstream 1367311 12434166 ~ 12462665 (+)
G98759 NA other downstream 1908784 12975639 ~ 13046813 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other downstream 2357025 13423880 ~ 13429300 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other downstream 2366196 13433051 ~ 13437147 (+)

Expression


Co-expression Network