AMCG00015551 (LOC106608688)


Basic Information

Item Value
gene id AMCG00015551
gene name LOC106608688
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 11994182 ~ 11998221 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015551
ATGCCATCTTGGGTTTCTTCTCTCCAGGTGGTATACAAGAACAATGACTTCAAACTGGAGCTGTCGCGCCTGGCCATTGAGGGCGACCCCAAGGTCAGCCTGCATGGGGACCTGGTGTTCCGCTGCGAGGACGTGGCCGCCCTGGACCCCGTCACCTTCGAGACGCCCGAGTCCTACATTGCCCTGCCAAAGTGGAACACCAAGAAGACCGGCTCCATCTCCTTCGACTTCCGCACCACCGAGCCCAGCGGCCTGCTGCTCTTCAGCCACGGGCGGCTGCAGGGGCCCAAGGAGAGCCGCCCCGACCGGCTCCTCAAGGCCGACTACTTTGCCATCGAGCTGCTGGATGGCTTCCTCTACCTCCTCATGGACATGGGCTCCGGCAGCATCAAGATGAAGGCCAGCAGCAAGAAGGTCAACGATGGGGAGTGGTGCCACGTGGACTTCCAGAGAGAGGGACGCAAGGGCTCGATCTCGGTGAACAGCCGCAGCACCCCCTTCAACTCCAATGAGGGCAGTGAGATCCTGGACCTGGACAGCGAGATGTACCTGGGGGGCCTGCCGGAGAGCCGGGGCAGCCTGATCCTGCCCCCTGAGGTGTGGACCGCCCTGCTCAACTACGGCTATGTGGGCTGCGTGCGCGACCTGTTCATCGACGGCAAGAGCCGCGACGTGCGCCGGCTGGCCGAGATGCAGAGCGTGCCAGGGGTCAGCAGTTTCTGTACCCGCGAGCTGCAGAAGAAGTGCGCCAGCACCCCCTGCCACAACAGCGGCCTGTGCCGGGAGGGCTGGAACCGCTACATCTGCGACTGCACCGGGACGGGGTACCTGGGGCGCAACTGCGAGACCGAAGCCACGGTGCTGAGCTACGACGGCAGCATGTACCTGAAGATCATCATGCCCGGAACGATGCACACGGAGGCGGAGGACGTCTCCCTGCGCTTCATGTCCCAGAGGGCCTACGGCCTCCTCATGGCCACCACCTCCAAGGAGTCGGCTGACACCCTGCGGCTGGAGCTAGACGGTGGGAAGGTCAAACTGACCGTCAACCTAGGTAACGTCCAGCATCCAGCTCCTGTCCCGCACAAGACAAACGATATGACATGA

Function

NR:

description
PREDICTED: neurexin-2-like isoform X8

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015551 True 1107 mRNA 0.63 3 11994182 11998221

Neighbor

gene id symbol gene type direction distance location
AMCG00015550 nrxn2,LOC106935608 coding upstream 49713 11941486 ~ 11944469 (+)
AMCG00015549 NA coding upstream 310046 11682291 ~ 11684136 (+)
AMCG00015548 NA coding upstream 528301 11442221 ~ 11465881 (+)
AMCG00015542 NA coding upstream 579664 11393516 ~ 11414518 (+)
AMCG00015543 sf1,LOC102786152,LOC106577532 coding upstream 601590 11376597 ~ 11392592 (+)
AMCG00015552 LOC106532321,LOC106577539 coding downstream 57993 12056214 ~ 12058714 (+)
AMCG00015553 LOC107572116 coding downstream 242315 12240536 ~ 12244228 (+)
AMCG00015554 nrxn2b,LOC102778344,LOC102303057,LOC106456332,LOC107679953,LOC107714885,LOC101464276 coding downstream 296883 12295104 ~ 12354720 (+)
AMCG00015559 NA coding downstream 496701 12494922 ~ 12497034 (+)
AMCG00015558 NA coding downstream 556056 12554277 ~ 12565755 (+)
G98590 NA non-coding upstream 446363 11547565 ~ 11547819 (+)
G98569 NA non-coding upstream 525554 11466852 ~ 11468628 (+)
G98442 NA non-coding upstream 975073 10988856 ~ 11019109 (+)
G98430 NA non-coding upstream 1055616 10924132 ~ 10938566 (+)
G98422 NA non-coding upstream 1174012 10819748 ~ 10820170 (+)
G98625 NA non-coding downstream 401512 12399733 ~ 12405119 (+)
G98731 NA non-coding downstream 814255 12812476 ~ 12812692 (+)
G98831 LOC100846954 non-coding downstream 1215649 13213870 ~ 13214646 (+)
G98838 NA non-coding downstream 1258878 13257099 ~ 13259347 (+)
G98843 NA non-coding downstream 1262774 13260995 ~ 13262832 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other upstream 577583 11358152 ~ 11416599 (+)
AMCG00015528 NA other upstream 766361 10872670 ~ 11227821 (+)
AMCG00015539 NA other upstream 927327 11059490 ~ 11066855 (+)
G98402 NA other upstream 1253049 10735979 ~ 10741133 (+)
G98302 NA other upstream 1543519 10448166 ~ 10450663 (+)
AMCG00015555 NA other downstream 435945 12434166 ~ 12462665 (+)
G98759 NA other downstream 977418 12975639 ~ 13046813 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other downstream 1425659 13423880 ~ 13429300 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other downstream 1434830 13433051 ~ 13437147 (+)
G98884 NA other downstream 1447304 13445525 ~ 13447279 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033294 NRXN2 coding NC_007118.7 CM002891.2 427503 ~ 506340 (+)
grasscarp (Ctenopharyngodon idella) CI01000200_00322556_00344497 NA coding CI01000200 null 321998 ~ 345262 (+)