AMCG00015552 (LOC106532321,LOC106577539)


Basic Information

Item Value
gene id AMCG00015552
gene name LOC106532321,LOC106577539
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12056214 ~ 12058714 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015552
ATGGAAGAGCTGCACTGGTCACGAGAGCTGTACATCGGCGGCGTCAGTAAGAACATGTATAACAACCTGCCCAAGCTTATTGCATCCCGGGACGGGTTCCAAGGCTGCCTGGCCTCTGTGGACCTGAATGGGAGACTGCCGGACCTGATAGCGGACGCCCTCCACAGGGTGGGCCAGGTGGAGAGGGGCTGCGAGGGCCCCAGCACCACCTGTACGGAGGACTCCTGCTACAACCAGGGCGTGTGTCTCCAGCAGTGGGAGGGCTTCTCCTGTGACTGCAGCATGACGTCGTATGGGGGATCGTTCTGCAGCGACCGTGAGTGA

Function

NR:

description
PREDICTED: neurexin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015552 True 324 mRNA 0.61 3 12056214 12058714

Neighbor

gene id symbol gene type direction distance location
AMCG00015551 LOC106608688 coding upstream 57993 11994182 ~ 11998221 (+)
AMCG00015550 nrxn2,LOC106935608 coding upstream 111745 11941486 ~ 11944469 (+)
AMCG00015549 NA coding upstream 372078 11682291 ~ 11684136 (+)
AMCG00015548 NA coding upstream 590333 11442221 ~ 11465881 (+)
AMCG00015542 NA coding upstream 641696 11393516 ~ 11414518 (+)
AMCG00015553 LOC107572116 coding downstream 181822 12240536 ~ 12244228 (+)
AMCG00015554 nrxn2b,LOC102778344,LOC102303057,LOC106456332,LOC107679953,LOC107714885,LOC101464276 coding downstream 236390 12295104 ~ 12354720 (+)
AMCG00015559 NA coding downstream 436208 12494922 ~ 12497034 (+)
AMCG00015558 NA coding downstream 495563 12554277 ~ 12565755 (+)
AMCG00015563 NA coding downstream 616528 12675242 ~ 12699160 (+)
G98590 NA non-coding upstream 508395 11547565 ~ 11547819 (+)
G98569 NA non-coding upstream 587586 11466852 ~ 11468628 (+)
G98442 NA non-coding upstream 1037105 10988856 ~ 11019109 (+)
G98430 NA non-coding upstream 1117648 10924132 ~ 10938566 (+)
G98422 NA non-coding upstream 1236044 10819748 ~ 10820170 (+)
G98625 NA non-coding downstream 341019 12399733 ~ 12405119 (+)
G98731 NA non-coding downstream 753762 12812476 ~ 12812692 (+)
G98831 LOC100846954 non-coding downstream 1155156 13213870 ~ 13214646 (+)
G98838 NA non-coding downstream 1198385 13257099 ~ 13259347 (+)
G98843 NA non-coding downstream 1202281 13260995 ~ 13262832 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other upstream 639615 11358152 ~ 11416599 (+)
AMCG00015528 NA other upstream 828393 10872670 ~ 11227821 (+)
AMCG00015539 NA other upstream 989359 11059490 ~ 11066855 (+)
G98402 NA other upstream 1315081 10735979 ~ 10741133 (+)
G98302 NA other upstream 1605551 10448166 ~ 10450663 (+)
AMCG00015555 NA other downstream 375452 12434166 ~ 12462665 (+)
G98759 NA other downstream 916925 12975639 ~ 13046813 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other downstream 1365166 13423880 ~ 13429300 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other downstream 1374337 13433051 ~ 13437147 (+)
G98884 NA other downstream 1386811 13445525 ~ 13447279 (+)

Expression


Co-expression Network