AMCG00015571


Basic Information

Item Value
gene id AMCG00015571
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 12914666 ~ 12922985 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015571
GTGGCTTTTCTCGATCACATGATAGAGCCATAAAGTCACATGACATTcaattgttttcctgttttcctgGTAATCTCGAAGTTGAATATAGTGCCTGAAAGACAGTCCAAATGGAGAGCTCCGAGCGGATAGAGACGCTGCGATTCAGCGGTGGAAGAGACCGTGTCGTTTTCGCACGAATGATCgcgtttttaacatttttaactcTGCCTGTGTTTGGAAACTTTGGTCAGGTCAACCCCTTGGTGTACGAGGAACAGCTGCTGTGGGTCAGCGGCGGGGCGGGAGCTGTAAACACCTATAGGATCCCCCTGGTGTCCTTCACCCCGCAGGGCAGCCTGCTCGCTTTCTCTGAGGGAAGGAAGAGTTCTGCCTCTGACAGTGGGGCCAAGTTCATTGCCATGAGGCGTTCGACGGACAGAGGTGCAACATGGAGCCCTACTTCCTTCATCGTTGATGACGGGGGAGTGGCTGATGGATTGAATCTGGGCTCGGTGCTGGTGGATGAGGAAACAGGCTCTGTGTTTGTCATGTACACTCTGTGCCCTCACTACTACCAATGCCAGGTGTCCAGCACCATGATCACTCAGAGCACTGATGATGGGCTGAGCTGGAACCATCCCAGGAACCTCTCCACTGAGCTGGGAACCAAGATGTTCATGCCAGGGCCGGGCTATGGCATCCAGAAGCGCCTTCCCCCAGCTAAGGGCAGGTTGGTCGTGTGTGGTCATGGGACGATCCAGGGGGATGGGGTTTTCTGTGTGCTCAGCGATGACCATGGTCGTACCTGGAGGAATGGCGGTGCCATGAAGAGCATCCCCTATAATCAGCCAAAGAAAGCCGGAGACTTTAACCCTGATGAGTGCCAGCCAGTGGAAATGCCCGATGGCTCAGTGGTGATTAATGCACGGAACCAGAACACGTATCATTGCCGCTGCCGGCTGGTAATGCGCAGTGATGATGGCTgagtcAATTTGACCTTGCGTTGGTCCACTACTAATGGTTCGACTTGGGAACCACAGACAGTGCAGTTGTGGGCGGGGCCAAGTGCCTACTCTGCGATGACGTCACTGAGCAACAGCATCGATGACCTGAATTACATCTATATGGTGTACGAGAAAGGACACCGAGATCCCTATGAGACCATATCCTTCGCCAAAATTCATCTGTATGGAGGACGgtagagagagaatgtgtgtgtatatctttTTGGCAGGGAGTTTGTTTATGTCAATGTTGTTAGCAGTCTGCCTTCATGAAGTAGAAGAAGAGTACCCTTTGAGAAGGTCTGAAGTGTGTGTGACATGTATCGGGATGTGAGTGTACAAGCACAagtttctttctctctggcaGTAAGTGTTTCAGAAGATTCATTAAGTATGTATGTTTACATggcatttaaaatttaaatttgcaAATCAATCTGTCTGAATGCTGCAACTGACCTAAAGATTCCTGtttatttccaaaatacaaTTCCTAATAATGGAATTTTCTATGTGGCTTATCCAATTCAAACCTGATGTCCCAGTCTTGGCCTTCAGTTGTCTTTTGGCTGTGTGCCTCTGCTAAAATCAGAAACTTATTTTTggccattcattttttttgtttgtttggttttgtgttgtaATATCATACATCATTTGACTTTTCTTACTTAAGAGATTTTGTCATTGAATCTCACTATCTTAGAAACCAAATACTTAATGTTTAGATACATATCAGTGTATTCTGAATACAGTATTGGAATAGAAAAGATCTAAACCATCTAAAAGGGAACTTATAGAAGAGGAATGCTCTTCTGTAGCAACTGTCTTAACAACACACTATAGTATTGTATTATAAGTAATGTCTGAAGTGCTAGTATTCCAATAGAatcttgaatatatatttggaaaacTCCAACCTTGGAATTGGAATACTGACTGATTTATATGGAATAGCTATTCAGAATACATTGTGAATATCAATGCAGTTGTGATGACTAAATACATGTGACATTTCCATGAAAATTGAATTCCAGGCTATGTTTATGGTCAggttataattgtattattcaaaaatatatatttttaaaacaataagaaaaccaTGAGCACAAAATATTGGGCAAGATGTTGAAAAGCAAGACTGATTTTGAATATTTGCCATATGAATTTTGTATTCCACatggaaaatgcaaattgtaaatgtaatgattGTCTCTCTGTCTTGGCCATTGTCTACTTGTCTGGAATTATGGCGTGTCCATTTTTCTGATAATCTCCAGTTCAGGAATTCCTGGgactcataaaaaataaaataataataatttacacaaTCTACTGGGCGATTGTAGTGTAGagtgtttttattcagtttaaatgtGGAGGTGCCAGGGGTGCAGGTTGAGCTGTGTAATGCTTATCGGTTCAATTTGTACAAAATTCTCTGCAAttgtctaaattaaattaagttactAAACTAagttaaaaatcaatacaacattGTTTTAACACTAATAGCTTTTGGAAGATATACTAATTTCTTGTTTGCAGCAGTTCTTCAGTCCCCCCAGACTCAGATTGAAGTAGATACTTGAAGAATTAAACAGTTCTATCTGTCTTGgccaacaaatcagtgcagacatcttacagaagaaaacaaaagtgtactTGTAGTAAATGCAAtactattgaaaggaaatcttcCCATTTGCCTCAAAAGAGAGTTTTTGACACtccaaacaacacaaagaatcTTTGAATGATGCATGCTTGTAATaacaggaagagaaaaaacattgaaaaggtaaacaattaaaatagtaatgaCTGGACACACATCAGAGATGGATTAAAGCACAATGCATtccaagagattaaaaatagTCAAGCATACCTTATGTCAGGAAGGGAAGATGAGATCAGATGAGATTTTTTCTGGCATAACTTGGAATAGAGACACTAGATGTGGAATGTGGCATGACTTGGAATAGAGCCACTAGAAGTGGAAATGTCTTGGGCATTTACAGTAGCTGCTGATgataatttgtaaaaataaaaaaacaactttacatttttaacacagtGTTCTAAAATGTGTGCTGATAGGTGTTATACCTAATCAGGTTGGTATGTTGGTAGATGTTTTGATGGATGAACatgttgattatatttttattcattgcTGATATTCCTTACAACTCAGGGAAAATGCATCATTGATTTTGTTACTTCAGGTTCTTTATCTGGTTAATCCCCTCTACTTTTTAGAGTGGTCTTTTCCATGAATACACTCAAACTCATATGGTGACTCCAATAGGGATCTGTACAACATGACTGAGGAATTTTGAAGGAAGTCTGGGGAAATCTGGGCATGTGAAATAAGCTGAACTGGGTCTGTTGTGTCCCTCACTCCCTAGGGTGGGTGTGAAAAAACACCAGAAATATTTTTCACTATTGTAaatcatgtacattttattttgtaaactgatcagaataaactatttaaattta

Function

GO: NA

KEGG:

id description
ko04142 Lysosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015571 True 3497 mRNA 0.40 6 12914666 12922985

Neighbor

gene id symbol gene type direction distance location
AMCG00015572 NA coding upstream 6709 12902932 ~ 12907957 (+)
AMCG00015573 NA coding upstream 18255 12886859 ~ 12896411 (+)
AMCG00015566 NA coding upstream 39904 12860036 ~ 12874762 (+)
AMCG00015567 NA coding upstream 123166 12788993 ~ 12791500 (+)
AMCG00015565 NA coding upstream 165598 12746482 ~ 12749068 (+)
AMCG00015576 NA coding downstream 69247 12992232 ~ 13011882 (+)
AMCG00015581 NA coding downstream 153314 13076299 ~ 13107013 (+)
AMCG00015584 NA coding downstream 188342 13111327 ~ 13112802 (+)
AMCG00015580 NA coding downstream 231533 13154518 ~ 13155953 (+)
AMCG00015583 NA coding downstream 245672 13168657 ~ 13171973 (+)
G98731 NA non-coding upstream 101974 12812476 ~ 12812692 (+)
G98625 NA non-coding upstream 509547 12399733 ~ 12405119 (+)
G98590 NA non-coding upstream 1366847 11547565 ~ 11547819 (+)
G98569 NA non-coding upstream 1446038 11466852 ~ 11468628 (+)
G98442 NA non-coding upstream 1895557 10988856 ~ 11019109 (+)
G98831 LOC100846954 non-coding downstream 290885 13213870 ~ 13214646 (+)
G98838 NA non-coding downstream 334114 13257099 ~ 13259347 (+)
G98843 NA non-coding downstream 338010 13260995 ~ 13262832 (+)
G98876 NA non-coding downstream 464091 13387076 ~ 13391419 (+)
G98888 NA non-coding downstream 530902 13453887 ~ 13454126 (+)
AMCG00015555 NA other upstream 452001 12434166 ~ 12462665 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other upstream 1498067 11358152 ~ 11416599 (+)
AMCG00015528 NA other upstream 1686845 10872670 ~ 11227821 (+)
AMCG00015539 NA other upstream 1847811 11059490 ~ 11066855 (+)
G98402 NA other upstream 2173533 10735979 ~ 10741133 (+)
G98759 NA other downstream 52654 12975639 ~ 13046813 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other downstream 500895 13423880 ~ 13429300 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other downstream 510066 13433051 ~ 13437147 (+)
G98884 NA other downstream 522540 13445525 ~ 13447279 (+)
AMCG00015602 NA other downstream 653211 13576196 ~ 13613292 (+)

Expression


Co-expression Network