AMCG00015591 (LOC101069382,LOC104961169,LOC107581227)


Basic Information

Item Value
gene id AMCG00015591
gene name LOC101069382,LOC104961169,LOC107581227
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13433051 ~ 13437147 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015591
ATGATCACAgtCATAGTGTGGGAGCAGGAGTATTTCCAGGGGAAGTGTCAGGAGTTTACGGCAGAATGCTGCAACATCCAGGACTGTGGCTTCGACAACATCCGCTCACTGCGCATCGAGAGCGgggcctgggTGGGGTTTGAGCACCATGACTTCCAGGGGCAGCAATTTGTGCTGGAGAGGGGGGAGTACCCACGCTGGGACAGCTGGAGTGGCAGTCTGGCCTACCATGCCATGGGCTGGTGCAACAATGAAGTGGGCTCCATGCACGTGCAGAGTGGGGCGTGA
>TU123358
TCGCAACAACAACCCCGGCGCACAAagcaaagagaaagaaagcgaGTGAAAAAGCACATGTCACGCGTGTTTCACTCCACAGAAAGGGAGGCAGAGGGAGCTGTCAATATAAAACGGCAGCGCCAGAAAGTGGACAGCTCTACTAAAAGTAAAAGCTCCGTTGCGAGTAGTGCATTCACAGCCCGTTGacaGTTAAAGATGCAGAAAGCAGCTATTGCTCAGCAGGGGGTTGGCATGGGGTTTGCTCCCTTCTGGAAGtCTCACCACAGCAGCAGGATGGTGATCTTCGAGAAGGAGAATTTCCTGGGCCGTAGTGTGGAGCTGTGTGATGACTTCCCCTCCCTGCAGGCCATGGGCTGGTGCAACAATGAAGTGGGCTCCATGCACGTGCAGAGTGGGGCcTGGGTGTGTTACCAGTTCACAGGCTACAGGGGATTCCAGTACATCATGGAGTGCGAGCGGCATAGCGGAGACTACCAGCACTGGAAAAACTGGGGCTCCCACAGCCAGAGCCCCCAGATCCAGTCCATCCGCCGCAtccagcactgagacactgagacaccaAGACCAGAAGACACACATAGACAATAAGACATACTGAGAGACACTGtgtcacaaaaacacacattgagaTACTGACTGAGAAAACAAGACACACTGAGACAATAAGACACACACCAtgacactgactgatacactgactaaCTCAGACACTGGGACACAATAAGACACTGCCATTGTAAGGcacagatgcatttaaacattgtcCAATACACTGAGACTCACTAAAGCACTGAAACTCACCAACACACTGACACCTACACTCTtacacacactgatgcactgacacacacctaGACACATTGATACAacttgacacactgacacacacacttgccAATGGCTTTTATCAGATTTTAAAGGgtaagagacacacacatgcaaaagaCATACAATAGGTGTGTGgactaatgtgtgtgtgtgtgtgtgtgtgtgtgcgtatgtggcTATTCTGCTAGCAATGGTGTAAtggcacaacacacactgcactgagctaCACTGTTCAGCACTGTggcatatacacagtatgagcTCTATAGGGGAACATTACTGTATTAACATGTACCTGCCCTGTACAGACTGAAAATCTACTGCTGTAATGGCTAAGTGTATGAGTGTGGGAACAGCATGGCTAATAAACTCCTGTTCAACTACACTG
>TU123359
TCGCAACAACAACCCCGGCGCACAAagcaaagagaaagaaagcgaGTGAAAAAGCACATGTCACGCGTGTTTCACTCCACAGAAAGGGAGGCAGAGGGAGCTGTCAATATAAAACGGCAGCGCCAGAAAGTGGACAGCTCTACTAAAAGTAAAAGCTCCGTTGCGAGTAGTGCATTCACAGCCCGTTGacaGTTAAAGATGCAGAAAGCAGCTATTGCTCAGCAGGGGGTTGGCATGGGGTTTGCTCCCTTCTGGAAGgtCATAGTGTGGGAGCAGGAGTATTTCCAGGGGAAGTGTCAGGAGTTTACGGCAGAATGCTGCAACATCCAGGACTGTGGCTTCGACAACATCCGCTCACTGCGCATCGAGAGCGgggcctgggTGGGGTTTGAGCACCATGACTTCCAGGGGCAGCAATTTGTGCTGGAGAGGGGGGAGTACCCACGCTGGGACAGCTGGAGTGGCAGTCTGGCCTACCATGTGGAGAGGATGATGTCACTCCN

Function

NR:

description
PREDICTED: beta-crystallin A3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015591 False 288 mRNA 0.58 4 13433454 13436127
TU123358 True 1219 TUCP 0.48 4 13433051 13437147
TU123359 False 503 TUCP 0.54 4 13433051 13435702

Neighbor

gene id symbol gene type direction distance location
AMCG00015588 NA coding upstream 66921 13351516 ~ 13366130 (+)
AMCG00015590 NA coding upstream 95617 13329582 ~ 13337434 (+)
AMCG00015585 NA coding upstream 176898 13251013 ~ 13256153 (+)
AMCG00015587 NA coding upstream 190160 13240191 ~ 13242891 (+)
AMCG00015583 NA coding upstream 261078 13168657 ~ 13171973 (+)
AMCG00015597 NA coding downstream 64496 13501643 ~ 13516584 (+)
AMCG00015600 NA coding downstream 161139 13598286 ~ 13607255 (+)
AMCG00015607 NA coding downstream 251943 13689090 ~ 13716822 (+)
AMCG00015609 NA coding downstream 365334 13802481 ~ 13821972 (+)
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding downstream 395448 13832595 ~ 13834746 (+)
G98876 NA non-coding upstream 41632 13387076 ~ 13391419 (+)
G98843 NA non-coding upstream 170219 13260995 ~ 13262832 (+)
G98838 NA non-coding upstream 173704 13257099 ~ 13259347 (+)
G98831 LOC100846954 non-coding upstream 218405 13213870 ~ 13214646 (+)
G98731 NA non-coding upstream 620359 12812476 ~ 12812692 (+)
G98888 NA non-coding downstream 16740 13453887 ~ 13454126 (+)
G98881 timm10,LOC107746912,LOC107674252,LOC107556822 non-coding downstream 20982 13458129 ~ 13459786 (+)
G98889 NA non-coding downstream 56635 13493782 ~ 13516429 (+)
G98901 NA non-coding downstream 142577 13579724 ~ 13597715 (+)
G98918 NA non-coding downstream 353895 13791042 ~ 13810939 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other upstream 3751 13423880 ~ 13429300 (+)
G98759 NA other upstream 386238 12975639 ~ 13046813 (+)
AMCG00015555 NA other upstream 970386 12434166 ~ 12462665 (+)
AMCG00015544 LOC105903120,LOC107562780,LOC108434861,LOC107691965,LOC106577530,LOC107742298 other upstream 2016452 11358152 ~ 11416599 (+)
AMCG00015528 NA other upstream 2205230 10872670 ~ 11227821 (+)
G98884 NA other downstream 8378 13445525 ~ 13447279 (+)
AMCG00015602 NA other downstream 139049 13576196 ~ 13613292 (+)
AMCG00015608 NA other downstream 444278 13881425 ~ 13884671 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other downstream 659798 14096945 ~ 14100855 (+)
AMCG00015657 NA other downstream 1611776 15048923 ~ 15200978 (+)

Expression


Co-expression Network