AMCG00015597


Basic Information

Item Value
gene id AMCG00015597
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13501643 ~ 13516584 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015597
cagtgtgtATGGAGCAGTGTGAGAGTGCTGCCTCTCTGCTGGCCTCAGTGAGGGAGCAGGAGGCCCAGTTTCAGAGGCTGACTCGcgccctggaggaggagaggcaGCGGGTCAGCCAGCAGCTCACCGTCGCCAACGGCAACCCCCGAGCCCCCCCCGCCCAGCAGAACGGCCGGGTCTCTGGTGATGCTGAAATAGACAGGTTGAAACTGAGCGAGGCATACATCAACGGCACACAGTACAGGATGCTGGACCCTGGGCACTTCGTCGAAGAAACTGTAACTGTGGAGGAGGACCCTGAGCAGCCTGCTTCTGTGGTCTCCGTGGAAACCAGCGAGGACGGCACAACACGACGCACTGAGACCACGgtgaagAAGGTGGTGAAGACAGTCACCACACGCACGGTCATCCCCTCCATGTCGGACACCCTGTCACTGGACGGCTCCCTGCAGGGTGCCCCTCTGCCCCCcacccacaacaacaacaatgcctCCTACTCCGCCACACTGGACAGAGTTTACCGTAACCCAGGGCCACAGGCGGGGGTTGGGGGTGGCGGGGAGCTATACCCGGGCACTGCCACTGTGCCCCGAAACTATCACTATGCCACTGATCCCCGAGTAGGAGGGGGTTATGATGACTCTGGCTACAGGACCGGCCCTCCCTCGGATGCCTATACCAGTCTAGGAAGGGTGACGCGGATGGATGAGCGATACAGgccggTGGATGGTTACCGCACGCTAGACTCGGGGTATCGGGCCCCCAGTCGGCAGACTGACCCATATGCGGCTCAGCCCCAGGTGAGGCTGGGCAGCGCGATGGAGCTTGCAGCACCCCCCCGCTTCATCGCCGAGCCCTATGGCCTGGAGGACGACCAGCGCAGCCTAGGCTACGATGACCCCGACTACGGCCTGCCCCCCCCTGGCTACGGGACCTTGCCCCGCGGTGGGGGTGGTGGAACCCTGGACACCCGACGCAGACTCCGgagcTATGAGGACACCCTGGATGGAGACATGGGTGGTCCCGGGGGAGAGCCTTATTACTGGGGAGCTCCCCTGGCCCAGGCCGAGCGGGGAAGCATGGCCAGCCTGGACAGCACACTGCGCAAGGGGCCCCCCCCCACCTGGAGACAGCCTGAGCTCCCCGAGGTCATCGCCATGCTCAACTACCGCCTAGACCCGGTCAAGACCAACGCTGCAGCCTTCCTGCAGCACCTCACCTACAAGAATGACAAGgtGAAATCGGAGGTGCGCAGGCTGAAGGGGGTGCCTGCGCTGGTGTCTCTGCTTGATCACCCCGGGAGGGAGGTAAGGCAGGCAGCCTGCGGGGCTCTGAAGAATATCTCGTTTGGCCGAGACGGAGAGAACAAGATCGCCGTGAAGAACTGTGACGGTGTTCCCGCACTTGTCCGCCTGCTGCGGAAGACTCATGAGCAGGAACTCACAGACACCATCACCGGCACGCTGTGGAACCTGTCCTCCCATGACTCTGTGAAGATGGAGATTGTGGACCATGCGCTGCATGCCCTGTGCGATGAGGTGATGGTGCCGCACTCGGGCtgggagagggagcgagagagggaggaggagagctgCAAGCCACGCCACCTGGAGTGGGAGACTGCCCTGACCAACACCGCAGGCTGTCTACGGAATGTCAGTTCGGAGCGCAGTGAGGCTCGGAGGAAGCTCAGAGAATGCACGGGATTGcTCATAGAGAACTGTGTATGCCTGCTGAGGAATCTGTCCTACCAGGTGCACAGGGAAGTGCCAGGATGTGAGCGCTACCAGGATGCCATGCCCCTCGGCCAGGGCCCTGCCTCCAGCTCCTCCCAGAAGGGCAGCTGCTTTGGGTCCAAGAAGAGCAAAGGAAAGAAAGACCCAGACGATCTCTCTGCTGACATGTATGGTCGATACATACGAGCGATGGTGCGTCAAGAGAAGGGTCTGTCGCTGATCACAGAACTCTTGTCCCACAACCACGACCGTGTGGTGCGCGCCATGTCTGGGGCCTTGAGGAACCTGGCCATTGACCCCCGCAACCGCCAGCTGCTCGTCCCTAACCTGGTATCTAACCTCCCTGGGGGGCAGCAGCAGCCGGCCAAgtccctggaggaggagacagtgGTGTCAGTGCTCAGCACGCTGAACGAGGTGCTGCAAGCAAACCTGGAGGGAGCCAAGACCCTGAGGCAGAGCCAGGGCATTGAGAAACTGGTGCTCATCAACAAGGACGGTAATCGTGCTGAGCGGGAGGTGCGAGCGGCAGGGCAGGTGCTGCAGACAGTGTGGGGCTACAAGGAGCTGCGCCGGCCCCTGGAGAAGGAGGGCTGGAAGAAGACCGACTTCACGACGGCCAATGTTGCGCCCCATGGCCCCCGGACCAACGCGGCCTACGAGGACACCACCGCTCCCCTCATCGACCGAGGTgacaagagagacagagagcgggACAGAGACATGATCCCCATGAATGATATGGGACCTGATACCTATGCCACACTGGACCAGAGAGACCGGACGCTGGACCGGTCCATTGAcctgtcagagagagacactaTGCAGGGTGCTGTGTACAATGAGGGCAGTAGGCACTCTATCCCTCTGCTACACACCTATGATGGGGCATCTGGGGTGACTAAACACATCCCCAAGCCTTTAGAAGAGGATCCA

Function

GO: NA

KEGG:

id description
K05690 CTNND1; catenin (cadherin-associated protein), delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015597 True 2672 mRNA 0.62 18 13501643 13516584

Neighbor

gene id symbol gene type direction distance location
AMCG00015588 NA coding upstream 135513 13351516 ~ 13366130 (+)
AMCG00015590 NA coding upstream 164209 13329582 ~ 13337434 (+)
AMCG00015585 NA coding upstream 245490 13251013 ~ 13256153 (+)
AMCG00015587 NA coding upstream 258752 13240191 ~ 13242891 (+)
AMCG00015583 NA coding upstream 329670 13168657 ~ 13171973 (+)
AMCG00015600 NA coding downstream 81702 13598286 ~ 13607255 (+)
AMCG00015607 NA coding downstream 172506 13689090 ~ 13716822 (+)
AMCG00015609 NA coding downstream 285897 13802481 ~ 13821972 (+)
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding downstream 316011 13832595 ~ 13834746 (+)
AMCG00015616 NA coding downstream 468959 13985543 ~ 13993089 (+)
G98881 timm10,LOC107746912,LOC107674252,LOC107556822 non-coding upstream 41857 13458129 ~ 13459786 (+)
G98888 NA non-coding upstream 47517 13453887 ~ 13454126 (+)
G98876 NA non-coding upstream 110224 13387076 ~ 13391419 (+)
G98843 NA non-coding upstream 238811 13260995 ~ 13262832 (+)
G98838 NA non-coding upstream 242296 13257099 ~ 13259347 (+)
G98901 NA non-coding downstream 63140 13579724 ~ 13597715 (+)
G98918 NA non-coding downstream 274458 13791042 ~ 13810939 (+)
G99053 NA non-coding downstream 401011 13917595 ~ 13918028 (+)
G99056 NA non-coding downstream 408664 13925248 ~ 13933503 (+)
G99068 NA non-coding downstream 534911 14051495 ~ 14065138 (+)
G98884 NA other upstream 54364 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 64496 13433051 ~ 13437147 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other upstream 72343 13423880 ~ 13429300 (+)
G98759 NA other upstream 454830 12975639 ~ 13046813 (+)
AMCG00015555 NA other upstream 1038978 12434166 ~ 12462665 (+)
AMCG00015602 NA other downstream 59612 13576196 ~ 13613292 (+)
AMCG00015608 NA other downstream 364841 13881425 ~ 13884671 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other downstream 580361 14096945 ~ 14100855 (+)
AMCG00015657 NA other downstream 1532339 15048923 ~ 15200978 (+)
G99475 NA other downstream 1797452 15314036 ~ 15314414 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G256721 NA non-coding CI01000059 null 8646447 ~ 8648311 (-)