AMCG00015606


Basic Information

Item Value
gene id AMCG00015606
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13671315 ~ 13845677 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015606
cagagagacagagagagagagagacagagagagagagagagagagagaggggtgcgTGGGGAGCAGCAGGTTGGATGAGAGACAGAAaggaagagacagagggagTTACAGAGGAAAGTCTAGCCGAAAGCCGTTTTATTTCCACTCGTTCTGTGAACCATCAATGGACTCGAATCAGAACCGACTGCTTCTGTGCGCCATCGTGGCGCTGGTCTCGGTCCAATTAACCGAAGCTCAGCAAGTCAGCGCCACCCAAACGCCAACCGCCCCGCAGCTCGTCCGGGTCAATGGCACCCTGAGCCTGCAGTGCCGCACCGGTTCCGACAGCTACAGTCTGATGTGGTACCGCAACCGGCGAGCCAGCGGCGGCGTGTCGGCGGGGCTGGAGCCGCTGTCGTTTTCATACGCTTCCAGCTCTGAGGCCGATGTGTCCGACGCCCCGAAGGACGTGGAGGGGCGGGTCGAGTCCAAGCGAAGCGGGTCCGAGCTGAGCCTGCATCTGAGCGACACGCAGGTCGAGGTCACCCAGTCGCCGGCTCTGACTGCTCTGACAAACGGCAACATCAATCTGACTTGCGAAGTTAACCAGGATAACTATAATTTCTTCTGGTACCGCCAAGAACCGGGCCGGACCGAGCTGGTACCTCTGGGGGCGCTGTACAGCTATGATACCGACAAGGGCAGCGAGAAGGCTGACCGCACTGAGCTTGCGCAGCGGTTCGGCTTGATGTGCTGCGGGGTCGTGGTGGATCAAACCCCGGCTCTGCGCTCCGTGGGGCTGCAGGCGAATTTCACCGTTAACTGCTCCGTGGACCAAAGCAACTGGAACTTTTTCTGGTACAGACAGAGCCCGGGCCGAACCGAGCTGCAGGTTCTAGCCAGCATGATGGCCTTCGAGCACCAGCCCCAGGACGTGCCGGAGCAGCTGCGGCCCCGGCTGGGGGTGCAGAGGCTGGATCCGGATAAGCGGGTCGAGTTACTGTTGAACGAGGTCGCGGAGGAAGACGCCGGCTTGTACCTGTGCGCTGCTCGGGACACGGTGACGCGGCCAGTGCCTGTCGCTGTACAGCAGACTGCGTGGCTGCGCAGCGAGGCGGTTTGTGCGCAGCGCCCCGTCCTGCGCCGCTCACCGTGTCCTGCCTACTTCGGGAGCGGGACCCGGGTGGTGGTTCTCGtgcGTGACAAAAAggccccctctgtctctctcctccctccctcctgtgAAGAGGTGAAGAAACGACACAAAGCCACTCTGGTCTGTGTGATCCAGGACTTCTACCCTGAGATAGTCTCTGTGGTCTGGAAGAGAGAGGGCAAGGTGATTGACAAGAGGACCCATCTGGCTGAGCCTATCAAGAGCTCAGAGAAGGGACTATTCTCCACCACTGCCAGACTGACTATTTCTGAGAAGGCCTGGCTCAGGGGTGGGACTTACAGCTGCGATGTCAGTCATACTACTCTCATCCAACCATTGGTCAAGACTGTCACCATCCCCGGACTGGGCTCTCCACAGCAGACTCTACGAGTGGCCAAACTGTCCTTCTCTGTGCTGCTGAGCAAGAGCCTGTTGTATTGTGCCCTTATCAACACATTTCAGTACCAGTCAGAGTCCAGTGGGCGGATGGTCCGGTCCAGTCTGGTGTGTAAAGTGCCATTTCTACTTGACCAGTCCTCCCAATTCGgcctctgcccccccccagaACAGAGCCACCCAGACTGCACCGGGCTCAGCACTGGTCACCTGGCAGCTCAGAGTCAGACTGTCAGTGTGGAGAGGGCGCTGGGCTGA
>TU123537
ccccgCCTGCCTTTAGCACACTTATTATCAAAGGGAAGAGAGGAGATAGGAAGAGATTGCCGGAGAGGTCGatacagagatggagagaaagagctGAGAGGGGTAGTAATGACGGTGCAAGTAAGAATTTACCCCAGGAAACCAAAGGAGTCCAAATGAACTGAAAGAAgacagaatgaaaagaaaataataatatttcaacgCTACAAACGACAGCAGCGAATGGAAGGAAATGGATGAACAATAGAAAGAAAGGTTCAGTCAAATGGGGGAAAAATCAAAAGAAGGAAACATTGGAAAGAAATACCGAGAAAGTGGaagcagagaaagagacagtttTGAATAATCTGCGGTTGTGTCCTGTCACAGTTCAATTCTGAGAGCTCATAGAAGGACACATAGaaagtgacacacacagacagaaaggcaCATATACGAAAGACAAacgcacaaaaaataaaaaataagataaactaAACGTCGAGAGACACGCAGAAAGGGACACAGACAGTCCAGCGGACGAGAGAGCGAGAAAGACACGCAAACAGATGTAACGGTTTTTGTAACCAGGTATAGCACAGTGAATTACGGGGGGACACAGcagcacagtgatTTCTCCCTTTACAATAATGCCCTGCTGtcaaaaactgtttaaaaggCATACATCCAGTTTTGGGTCTCCGTTTCTGGATAATGAAATCCCGGGAGGAGGTTTAAGCCACAAACTGGCTGATTCGGGCAGCTTCTGGCAGTTTTTGCCCGGGGGTTGAAGTTTCGGCTGGCAGGCAGACTGCGTGGCTGCGCAGCGAGGCGGTTTGTGCGCAGCGCCCCGTCCTGCGCCGCTCACCGTGTCCTGCCTACTTCGGGAGCGGGACCCGGGTGGTGGTTCTCGtgcGTGACAAAAAggccccctctgtctctctcctccctccctcctgtgAAGAGGTGAAGAAACGACACAAAGCCACTCTGGTCTGTGTGATCCAGGACTTCTACCCTGAGATAGTCTCTGTGGTCTGGAAGAGAGAGGGCAAGGTGATTGACAAGAGGACCCATCTGGCTGAGCCTATCAAGAGCTCAGAGAAGGGACTATTCTCCACCACTGCCAGACTGACTATTTCTGAGAAGGCCTGGCTCAGGGGTGGGACTTACAGCTGCGATGTCAGTCATACTACTCTCATCCAACCATTGGTCAAGACTGTCACCATCCCCGGACTGGGCTCTCCACAGCAGACTCTACGAGTGGCCAAACTGTCCTTCTCTGTGCTGCTGAGCAAGAGCCTGTTGTATTGTGCCCTTATCAACACATTTCAGgtacTCAAGgtctacagaaaaaaacattagtgTGTGTACTCTGCAGCGAAGAGATGCTGGACTCCAGTGAGCCAACACAGACAGAATTGTACCAACGTGGACCAAACCACTCTGGCCTGCAGACAAGCTTGTGACACAGAAATTAACTGTGTTGCTGTAGGCAAATGCTGCaccgcacacagacacagctaaataagatgaataataatataatgcaatgAATAATTGCTCTCTTggctttttattaatgtaaagaaGTTAAACTCAATAAAGACAAACTACTTATAT
>TU123543
CTGTTACACAATCTTCCCAACCCCCTTCTCTTGTCAAGTGTCTGTGCAGAAACAGGGCTTCAGCACCTGCAGGTGCACACAGTGCAGCTTCCGTTACAACTGCAGTGAACCACAAggacagagggggaggggtggtaTACAGTTTACAGATACAGGcagcagagaggaggagaagagagagagaaattgtaatataatgAATGTAAGTATATATTAGAGGAAGCGAGAGACAGGGTTATTACAGTACATACAGCGAAAGAGTTAAACGTGGAGAAAACCCACTACTCTCTATAAAAGGCTACACTTGAGGAGGGTGGGGTGGAGAGGatgtgacagagagacagagagagagagagacagagagagagagagagagagagaggggtgcgTGGGGAGCAGCAGGTTGGATGAGAGACAGAAaggaagagacagagggagTTACAGAGGAAAGTCTAGCCGAAAGCCGTTTTATTTCCACTCGTTCTGTGAACCATCAATGGACTCGAATCAGAACCGACTGCTTCTGTGCGCCATCGTGGCGCTGGTCTCGGTCCAATGTAAGTATCTCGCCATTCATCCGGGACAGGACTGGACTCGAGGAAAGCAGACACaaggagaaagaaagcaaaattaaatgtgcTGGAATAAATCACAAACGTCTCAGCCTCAGTGGCCGATTACATATTACAACCGTTGTCTgtataaaagaagaagaattaaagtaactttatttattacaattaattgTAACATTATGATTATCTCCAGAAATTCCTTAAACTTGAAAGAGTAGTCTACATTAGCTGCATTTAATATTCGCATGTATCTTCGTGTGTAATATATACCACATATAGCACCAAGTAAAGGTTacaacttaaataaataaataataataataataataatacaattttctaTATAAAGCTGCGTAATTTTACTAATAGATGCAGTTAAACAAATACGCTGACTTTGATTGAGATCTGTCgttgaaaaaaacattgtatttcttaaatgaatacataaagcATCGCTAACACCCCATTGCCTGTTCAGTAACCGAAGCTCAGCAAGTCAGCGCCACCCAAACGCCAACCGCCCCGCAGCTCGTCCGGGTCAATGGCACCCTGAGCCTGCAGTGCCGCACCGGTTCCGACAGCTACAGTCTGATGTGGTACCGCAACCGGCGAGCCAGCGGCGGCGTGTCGGCGGGGCTGGAGCCGCTGTCGTTTTCATACGCTTCCAGCTCTGAGGCCGATGTGTCCGACGCCCCGAAGGACGTGGAGGGGCGGGTCGAGTCCAAGCGAAGCGGGTCCGAGCTGAGCCTGCATCTGAGCGACGTGAGGCCGGGAGACAGTGGGTTGTACTACTGCGCTGCCAGAGACGCACAGAGGCGCGTCGGAACCGCCCGTCTGTGCAGGAACAGCGACACATGCTGATGCTCTTCACAGGCCAGAGAGAAAACTAGTGTAAAAGTGCGCTTTACATATCTGATTACATAGCAGAGTACGTTTTTATAGACACACATGTACAGGGACATACGCGGTCCTCTGTCAAATCCTTCTTTAAACGTCTCTCTCCCTTCAGTCTCTCTTTCCCAGACGCAGGTCGAGGTCACCCAGTCGCCGGCTCTGACTGCTCTGACAAACGGCAACATCAATCTGACTTGCGAAGTTAACCAGGATAACTATAATTTCTTCTGGTACCGCCAAGAACCGGGCCGGACCGAGCTGGTACCTCTGGGGGCGCTGTACAGCTATGATACCGACAAGGGCAGCGAGAAGGCTGACCGCACTGAGCTTGCGCAGCGGTTCGGCTTGAGTCGGCTGACAAAGCGGTCGGTCGCGCTGAAGGGGACGGGGCTGCAGGGGACCGACACCGCGCTGTACCTGTGCGCATCCAGAGACACACTGCGGCCGGGGAGACGGGCAGAGCTGTACAGAAGAGAGAGANagagagggagagagag
>TU123546
ccccgCCTGCCTTTAGCACACTTATTATCAAAGGGAAGAGAGGAGATAGGAAGAGATTGCCGGAGAGGTCGatacagagatggagagaaagagctGAGAGGGGTAGTAATGACGGTGCAAGTAAGAATTTACCCCAGGAAACCAAAGGAGTCCAAATGAACTGAAAGAAgacagaatgaaaagaaaataataatatttcaacgCTACAAACGACAGCAGCGAATGGAAGGAAATGGATGAACAATAGAAAGAAAGGTTCAGTCAAATGGGGGAAAAATCAAAAGAAGGAAACATTGGAAAGAAATACCGAGAAAGTGGaagcagagaaagagacagtttTGAATAATCTGCGGTTGTGTCCTGTCACAGTTCAATTCTGAGAGCTCATAGAAGGACACATAGaaagtgacacacacagacagaaaggcaCATATACGAAAGACAAacgcacaaaaaataaaaaataagataaactaAACGTCGAGAGACACGCAGAAAGGGACACAGACAGTCCAGCGGACGAGAGAGCGAGAAAGACACGCAAACAGATGTAACGGTTTTTGTAACCAGGTATAGCACAGTGAATTACGGGGGGACACATCCTGCCTACTTCGGGAGCGGGACCCGGGTGGTGGTTCTCGtgcGTGACAAAAAggccccctctgtctctctcctccctccctcctgtgAAGAGGTGAAGAAACGACACAAAGCCACTCTGGTCTGTGTGATCCAGGACTTCTACCCTGAGATAGTCTCTGTGGTCTGGAAGAGAGAGGGCAAGGTGATTGACAAGAGGACCCATCTGGCTGAGCCTATCAAGAGCTCAGAGAAGGGACTATTCTCCACCACTGCCAGACTGACTATTTCTGAGAAGGCCTGGCTCAGGGGTGGGACTTACAGCTGCGATGTCAGTCATACTACTCTCATCCAACCATTGGTCAAGACTGTCACCATCCCCGGACTGGGCTCTCCACAGCAGACTCTACGAGTGGCCAAACTGTCCTTCTCTGTGCTGCTGAGCAAGAGCCTGTTGTATTGTGCCCTTATCAACACATTTCAGgtacTCAAGgtctacagaaaaaaacattagtgTGTGTACTCTGCAGCGAAGAGATGCTGGACTCCAGTGAGCCAACACAGACAGAATTGTACCAACGTGGACCAAACCACTCTGGCCTGCAGACAAGCTTGTGACACAGAAATTAACTGTGTTGCTGTAGGCAAATGCTGCaccgcacacagacacagctaaataagatgaataataatataatgcaatgAATAATTGCTCTCTTggctttttattaatgtaaagaaGTTAAACTCAATAAAGACAAACTACTTATAT
>TU123550
ccccgCCTGCCTTTAGCACACTTATTATCAAAGGGAAGAGAGGAGATAGGAAGAGATTGCCGGAGAGGTCGatacagagatggagagaaagagctGAGAGGGGTAGTAATGACGGTGCAAGTAAGAATTTACCCCAGGAAACCAAAGGAGTCCAAATGAACTGAAAGAAgacagaatgaaaagaaaataataatatttcaacgCTACAAACGACAGCAGCGAATGGAAGGAAATGGATGAACAATAGAAAGAAAGGTTCAGTCAAATGGGGGAAAAATCAAAAGAAGGAAACATTGGAAAGAAATACCGAGAAAGTGGaagcagagaaagagacagtttTGAATAATCTGCGGTTGTGTCCTGTCACAGTTCAATTCTGAGAGCTCATAGAAGGACACATAGaaagtgacacacacagacagaaaggcaCATATACGAAAGACAAacgcacaaaaaataaaaaataagataaactaAACGTCGAGAGACACGCAGAAAGGGACACAGACAGTCCAGCGGACGAGAGAGCGAGAAAGACACGCAAACAGATGTAACGGTTTTTGTAACCAGGTATAGCACAGTGAATTACGGGGGaacacagcagcacagtgatTTCTCCCTTTACAATAATGCCCTGCTGtcaaaaactgtttaaaaggCATACATCCAGTTTTGGGTCTCCGTTTCTGGATAATGAAATCCCGGGAGGAGGTTTAAGCCACAAACTGGCTGATTCGGGCAGCTTCTGGCAGTTTTTGCCCGGGGGTTGAAGTTTCGGCTGGCAGGCAGACTGCGTGGCTGCGCAGCGAGGCGGTTTGTGCGCAGCGCCCCGTCCTGCGCCGCTCACCGTGTCCTGCCTACTTCGGGAGCGGGACCCGGGTGGTGGTTCTCGtgcGTGACAAAAAggccccctctgtctctctcctccctccctcctgtgAAGAGGTGAAGAAACGACACAAAGCCACTCTGGTCTGTGTGATCCAGGACTTCTACCCTGAGATAGTCTCTGTGGTCTGGAAGAGAGAGGGCAAGGTGATTGACAAGAGGACCCATCTGGCTGAGCCTATCAAGAGCTCAGAGAAGGGACTATTCTCCACCACTGCCAGACTGACTATTTCTGAGAAGGCCTGGCTCAGGGGTGGGACTTACAGCTGCGATGTCAGTCATACTACTCTCATCCAACCATTGGTCAAGACTGTCACCATCCCCGGACTGGGCTCTCCACAGCAGACTCTACGAGTGGCCAAACTGTCCTTCTCTGTGCTGCTGAGCAAGAGCCTGTTGTATTGTGCCCTTATCAACACATTTCAGgtacTCAAGgtctacagaaaaaaacattagtgTGTGTACTCTGCAGCGAAGAGATGCTGGACTCCAGTGAGCCAACACAGACAGAATTGTACCAACGTGGACCAAACCACTCTGGCCTGCAGACAAGCTTGTGACACAGAAATTAACTGTGTTGCTGTAGGCAAATGCTGCaccgcacacagacacagctaaataagatgaataataatataatgcaatgAATAATTGCTCTCTTggctttttattaatgtaaagaaGTTAAACTCAATAAAGACAAACTACTTATAT
>TU123556
actctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtgctgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtgtgtctgtgctgtattaaccccctctctctcagtgcagtgttaatgtactgtagtgtccag
>TU123572
Gtcatttgtgaaatgtgtacaaaacaattatagtcagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtactgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagtcagtgtgtctgtgctgtattaaccctctctctctcagtgcagtgttaatgtactgtagtgtccagtcagttgtccagtcagtcagtgtgtctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015606 False 1789 mRNA 0.60 9 13722074 13738786
TU123537 False 1602 lncRNA 0.47 6 13728676 13734758
TU123543 True 1966 TUCP 0.50 3 13671315 13739119
TU123546 False 1351 lncRNA 0.46 6 13728676 13734758
TU123550 False 1602 lncRNA 0.47 6 13728676 13734758
TU123556 False 250 lncRNA 0.46 3 13791048 13845677
TU123572 False 271 lncRNA 0.43 2 13787907 13810895

Neighbor

gene id symbol gene type direction distance location
AMCG00015601 NA coding downstream 5538 13663657 ~ 13665777 (-)
AMCG00015603 NA coding downstream 46610 13606375 ~ 13624705 (-)
AMCG00015599 NA coding downstream 150301 13520664 ~ 13521014 (-)
AMCG00015592 unc93b1 coding downstream 217539 13442591 ~ 13453776 (-)
AMCG00015595 NA coding downstream 238959 13426856 ~ 13432356 (-)
AMCG00015611 clp1,LOC107750374,LOC107680590,LOC107594950 coding upstream 20174 13865851 ~ 13869990 (-)
AMCG00015614 NA coding upstream 211662 14057339 ~ 14076142 (-)
AMCG00015615 NA coding upstream 233817 14079494 ~ 14084022 (-)
AMCG00015623 NA coding upstream 251748 14097425 ~ 14101752 (-)
AMCG00015620 NA coding upstream 268317 14113994 ~ 14118650 (-)
G98993 NA non-coding downstream 130358 13538527 ~ 13540957 (-)
G98992 NA non-coding downstream 131317 13539618 ~ 13539998 (-)
G98973 NA non-coding downstream 151795 13464858 ~ 13519520 (-)
G98950 NA non-coding downstream 254815 13396647 ~ 13416500 (-)
G98953 NA non-coding downstream 335386 13329892 ~ 13335929 (-)
G99049 NA non-coding upstream 37446 13883123 ~ 13884670 (-)
G99051 NA non-coding upstream 55679 13901356 ~ 13902314 (-)
G99055 NA non-coding upstream 72398 13918075 ~ 13918324 (-)
G99058 NA non-coding upstream 79571 13925248 ~ 13931122 (-)
G99063 NA non-coding upstream 188581 14034258 ~ 14038303 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other downstream 202493 13458127 ~ 13468822 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 1240667 12399733 ~ 12430648 (-)
G98546 NA other downstream 2254653 11414367 ~ 11416662 (-)
G98543 NA other downstream 2285116 11353783 ~ 11386199 (-)
AMCG00015540 NA other downstream 2325825 11332663 ~ 11345490 (-)
AMCG00015628 NA other upstream 449291 14294968 ~ 14336329 (-)
G99213 NA other upstream 602034 14447711 ~ 14456695 (-)
G99286 NA other upstream 635517 14481194 ~ 14482908 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other upstream 657087 14502764 ~ 14515279 (-)
AMCG00015642 LOC102792555 other upstream 724974 14570651 ~ 14577633 (-)

Expression


Co-expression Network