AMCG00015608


Basic Information

Item Value
gene id AMCG00015608
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13881425 ~ 13884671 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015608
AGTGTGAATATGGTTTGGCCCAGTCGGCCCCCATGTTAAAGTCCTATTGGACTGTCCCGATCAGTGCTGAAGCGCGCGGTGGAGACGCTCAGAAATGGCGACTCGCTCTAAACCAGcCGCTAGGGGGCAGAAGCGCAGGGCAGCCCCGGAGCCGCAGGGGGCTTTTTCCCAGGCAGAGGACACTGCCAGCAAGCAGCCCAAGAAAGAGAGGGGcaggagggacgggcaggaggGGGCAGCAGAGGGCCGGAGAATCACCATCGAGCACTGtGTGAGCTGACGCGTGTttgggaggcaggcagaggcgTTGCGTGGGGCCATCCTGGAGCAGCACCCTGACCTGCCTGTGCTCTGCAACCCGGAGAAACCCCGAAGGGGCAGCTTCGAcatcacactgacactgacccCGGGCCAGCagGTAAGTCTGTGGTCCGGTGTTAAGAAGGGTCCTCCTCGTAAACTGAAGTTCCCTGACCCTACAGTGGTGCTGTCTGCCCTGAAGGAAGCGCTGGAGAGCCAGTGAGACACAGCCCATCCTCTTCCAGAATTCCCTGTTCCAGGTGCATTATGACAAGGACTGACCAGCGGGGACCTCCAGTCATTCCTTTGATGTCCTCCCTGCCCTGGTATGAGAGACTGGTTGAGTGGCGAGAGAATTACACCGCATTCCTTTTTGCAAAACTGTTATGCTGtattttatgttgaaataaagttatttttctgaa
>TU123465
tctgttaattctaaatgcatttgactattttgttggtttggcagtttgccctttaaacacagtttgttttgaatgagTTGTTGCACACTTATATTGAGTTATTTGGcatttgggtttttgttttaagttgtaAGTGTGAATATGGTTTGGCCCAGTCGGCCCCCATGTTAAAGTCCTATTGGACTGTCCCGATCAGTGCTGAAGCGCGCGGTGGAGACGCTCAGAAATGGCGACTCGCTCTAAACCAGcCGCTAGGGGGCAGAAGCGCAGGGCAGCCCCGGAGCCGCAGGGGGCTTTTTCCCAGGCAGAGGACACTGCCAGCAAGCAGCCCAAGAAAGAGAGGGGcaggagggacgggcaggaggGGGCAGCAGAGGGCCGGAGAATCACCATCGAGCACTGtGTGAGCTGACGCGTGTttgggaggcaggcagaggcgTTGCGTGGGGCCATCCTGGAGCAGCACCCTGACCTGCCTGTGCTCTGCAACCCGGAGAAACCCCGAAGGGGCAGCTTCGAcatcacactgacactgacccCGGGCCAGCagGTAAGTCTGTGGTCCGGTGTTAAGAAGGGTCCTCCTCGTAAACTGAAGTTCCCTGACCCTACAGTGGTGCTGTCTGCCCTGAAGGAAGCGCTGGAGAGCCAGTGAGACACAGCCCATCCTCTTCCAGAATTCCCTGTTCCAGGTGCATTATGACAAGGACTGACCAGCGGGGACCTCCAGTCATTCCTTTGATGTCCTCCCTGCCCTGGTATGAGAGACTGGTTGAGTGGCGAGAGAATTACACCGCATTCCTTTTTGCAAAACTGTTATGCTGtattttatgttgaaataaagttatttttctgaacttgc
>TU123466
tctgttaattctaaatgcatttgactattttgttggtttggcagtttgccctttaaacacagtttgttttgaatgagTTGTTGCACACTTATATTGAGTTATTTGGcatttgggtttttgttttaagNNNNNAGTGTGAATATGGTTTGGCCCAGTCGGCCCCCATGTTAAAGTCCTATTGGACTGTCCCGATCAGTGCTGAAGCGCGCGGTGGAGACGCTCAGAAATGGCGACTCGCTCTAAACCAGcCGCTAGGGGGCAGAAGCGCAGGGCAGCCCCGGAGCCGCAGGGGGCTTTTTCCCAGGCAGAGGACACTGCCAGCAAGCAGCCCAAGAAAGAGAGGGGcaggagggacgggcaggaggGGGCAGCAGAGGGCCGGAGAATCACCATCGAGCACTGtGTGAGCTGACGCGTGTttgggaggcaggcagaggcgTTGCGTGGGGCCATCCTGGAGCAGCACCCTGACCTGCCTGTGCTCTGCAACCCGGAGAAACCCCGAAGGGGCAGCTTCGAcatcacactgacactgacccCGGGCCAGCagGTAAGTCTGTGGTCCGGTGTTAAGAAGGGTCCTCCTCGTAAACTGAAGTTCCCTGACCCTACAGTGGTGCTGTCTGCCCTGAAGGAAGCGCTGGAGAGCCAGTGAGACACAGCCCATCCTCTTCCAGAATTCCCTGTTCCAGGTGCATTATGACAAGGACTGACCAGCGGGGACCTCCAGTCATTCCTTTGATGTCCTCCCTGCCCTGGTATGAGAGACTGGTTGAGTGGCGAGAGAATTACACCGCATTCCTTTTTGCAAAACTGTTATGCTGtattttatgttgaaataaagttatttttctgaacttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015608 False 725 mRNA 0.57 5 13882610 13884666
TU123465 True 862 lncRNA 0.53 6 13881425 13884671
TU123466 False 862 lncRNA 0.53 6 13881425 13884671

Neighbor

gene id symbol gene type direction distance location
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding upstream 46679 13832595 ~ 13834746 (+)
AMCG00015609 NA coding upstream 59453 13802481 ~ 13821972 (+)
AMCG00015607 NA coding upstream 164603 13689090 ~ 13716822 (+)
AMCG00015600 NA coding upstream 274170 13598286 ~ 13607255 (+)
AMCG00015597 NA coding upstream 364841 13501643 ~ 13516584 (+)
AMCG00015616 NA coding downstream 100872 13985543 ~ 13993089 (+)
AMCG00015617 NA coding downstream 205296 14089967 ~ 14096267 (+)
AMCG00015618 NA coding downstream 219657 14104328 ~ 14112925 (+)
AMCG00015619 NA coding downstream 256451 14141122 ~ 14146970 (+)
AMCG00015625 NA coding downstream 336925 14221596 ~ 14234664 (+)
G98918 NA non-coding upstream 70486 13791042 ~ 13810939 (+)
G98901 NA non-coding upstream 283710 13579724 ~ 13597715 (+)
G98889 NA non-coding upstream 364996 13493782 ~ 13516429 (+)
G98881 timm10,LOC107746912,LOC107674252,LOC107556822 non-coding upstream 421639 13458129 ~ 13459786 (+)
G98888 NA non-coding upstream 427299 13453887 ~ 13454126 (+)
G99053 NA non-coding downstream 32924 13917595 ~ 13918028 (+)
G99056 NA non-coding downstream 40577 13925248 ~ 13933503 (+)
G99068 NA non-coding downstream 166824 14051495 ~ 14065138 (+)
G99070 NA non-coding downstream 179258 14063929 ~ 14109320 (+)
G99093 NA non-coding downstream 241950 14126621 ~ 14152625 (+)
AMCG00015602 NA other upstream 268133 13576196 ~ 13613292 (+)
G98884 NA other upstream 434146 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 444278 13433051 ~ 13437147 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other upstream 452125 13423880 ~ 13429300 (+)
G98759 NA other upstream 834612 12975639 ~ 13046813 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other downstream 212274 14096945 ~ 14100855 (+)
AMCG00015657 NA other downstream 1164252 15048923 ~ 15200978 (+)
G99475 NA other downstream 1429365 15314036 ~ 15314414 (+)
G99541 NA other downstream 1912279 15796950 ~ 15801634 (+)
G99624 NA other downstream 2246373 16131044 ~ 16131387 (+)

Expression


Co-expression Network