AMCG00015610 (LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014)


Basic Information

Item Value
gene id AMCG00015610
gene name LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 13832595 ~ 13834746 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015610
AGGGAGGTGGAGATCCTGATGTTCCTCAGTGCCATCGTCATGATGAAGAACAGGAGAGCCAtcactGTGGAGCAGCATTTGGGCAACATCTTCCTGTTCAGTAAGGTAGCAAACGTCATCCTGTTCTTCAGACTGGACATCAGACTGGGGCTGCTGTACCTCACGCTGTGCATCGtgtTCCTGATGACCTGTAAGCCACCTATGTACATGGGCCCCGAGTACATCAAATACTTCAGTGACAAGACCATAGACGAGGAGCTGCAGAGAGACAGCCGTGTGACCTGGATCGTGGAGTTCTTTGCCAACTGGTCCCCGGAGTGCCAGTCCTTTGCCTCGGTATATGCCGACCTGTCACTCAAgtataACTGTGCCGGTCTGAAGTTTGGGAAAGTGGATGTGGGGCGATATGGAGAGGTATCGAAAAAgtaTAAGGTGAGCACGTCTCCTCTCTCGAAGCAGCTGCCCTCTCTGAAGTCCAAGAAACTGTCCAAGAAGAAGGACGAGCCATCAATCCCCGCCCTGCCAGAGGAGGACATGACAGAGGCACAGGCCGAGGAGGCGGAGCCAGACACAGAGACCAAGAAGGACAAGTAG

Function

NR:

description
PREDICTED: thioredoxin-related transmembrane protein 2-B

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process

KEGG:

id description
K25112 TMX2; thioredoxin-related transmembrane protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015610 True 594 mRNA 0.53 7 13832595 13834746

Neighbor

gene id symbol gene type direction distance location
AMCG00015609 NA coding upstream 10623 13802481 ~ 13821972 (+)
AMCG00015607 NA coding upstream 115773 13689090 ~ 13716822 (+)
AMCG00015600 NA coding upstream 225340 13598286 ~ 13607255 (+)
AMCG00015597 NA coding upstream 316011 13501643 ~ 13516584 (+)
AMCG00015588 NA coding upstream 466465 13351516 ~ 13366130 (+)
AMCG00015616 NA coding downstream 150797 13985543 ~ 13993089 (+)
AMCG00015617 NA coding downstream 255221 14089967 ~ 14096267 (+)
AMCG00015618 NA coding downstream 269582 14104328 ~ 14112925 (+)
AMCG00015619 NA coding downstream 306376 14141122 ~ 14146970 (+)
AMCG00015625 NA coding downstream 386850 14221596 ~ 14234664 (+)
G98918 NA non-coding upstream 21656 13791042 ~ 13810939 (+)
G98901 NA non-coding upstream 234880 13579724 ~ 13597715 (+)
G98889 NA non-coding upstream 316166 13493782 ~ 13516429 (+)
G98881 timm10,LOC107746912,LOC107674252,LOC107556822 non-coding upstream 372809 13458129 ~ 13459786 (+)
G98888 NA non-coding upstream 378469 13453887 ~ 13454126 (+)
G99053 NA non-coding downstream 82849 13917595 ~ 13918028 (+)
G99056 NA non-coding downstream 90502 13925248 ~ 13933503 (+)
G99068 NA non-coding downstream 216749 14051495 ~ 14065138 (+)
G99070 NA non-coding downstream 229183 14063929 ~ 14109320 (+)
G99093 NA non-coding downstream 291875 14126621 ~ 14152625 (+)
AMCG00015602 NA other upstream 219303 13576196 ~ 13613292 (+)
G98884 NA other upstream 385316 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 395448 13433051 ~ 13437147 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other upstream 403295 13423880 ~ 13429300 (+)
G98759 NA other upstream 785782 12975639 ~ 13046813 (+)
AMCG00015608 NA other downstream 46679 13881425 ~ 13884671 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other downstream 262199 14096945 ~ 14100855 (+)
AMCG00015657 NA other downstream 1214177 15048923 ~ 15200978 (+)
G99475 NA other downstream 1479290 15314036 ~ 15314414 (+)
G99541 NA other downstream 1962204 15796950 ~ 15801634 (+)

Expression


Co-expression Network