AMCG00015617


Basic Information

Item Value
gene id AMCG00015617
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14089967 ~ 14096267 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015617
CGTCAGTGCCAGCCCAGACACACAACAAACTACAGTTCCCGGCATGCAGCGCGCCGGGAGCGAGTCCCTGTGCGGCGGCGGAGCGGAGCGGGTCGGACGGGGTTGGGCGCCCGGGAAGAACTGGCATTACATCGATATTTAAAAAGACTTTAAAGTTGTGAACTCTCACTTTAATAGCACCGAAGTCCCGGAGACGGACACGCACTCGCCTGCAGAGGATGCCCGTGCCCTGCCGTGCGGTTTTGCGACTTGCGTTCAGCTAACTTGACGCTTGCCAGCCCAGTCTCGGTGCGTTTCTTTATGAAAGGCGTTTTTGTAAGGAAAACCTCATAAGACGTCGAGAAGAGCCGGAGCACTTATATCAAGTCACcgcttctttctttctttcttttcggGTTAAAAATAACGAGTCGCCCTCTGCCTTCTGTATCGGGACACATTAAAAAAGTGTCTATTTTTAGACACGGTCGCggttttaatttccttaaataTGCCTGACATCTGTGCTGTGTCCCGGGGTCTCCGCTAAACTCAACTACCCCCTTGAGCTGCCTGGCGCTCAAACCCGTCCCCAAGCCGGCCGCCATACTTCTAAGGGGACACACGCTGAGGTGCTAAAGGGTACTTCTGAAAATCCAGCCCTAACACGGCACTGCTCTTGGACAGCGTCGTCGATCACAGTCCGTGTCTCCGCCGTTGTCCGGCTAATAAGCGCAGTCCACCGGCCGCACCGACGCCCTCGCCCCGCTGCACACTACACTAGTGCCCGCCTTGATGGCGCCTTGTCGGGCCGCCCTGTGCGTCGTGGCGCTGCTGTGCCTGGGGGCGCAGCGCGGGGCCGGGGAGTCGCAGTCGGCCGGCTCGGCCCCGGCGCTGGAGGGGCTGCGCTACCTGCTCACCGAGGGGTGCGGCCAGGCCCGGCGGGCGGCGGAGAGCCTGGTCGGGGGAGAGATGCTGGACTCCGGGCTGGAGtatgtgcaGACTGCAGTGGGAGTGGTGTCAAAGGGAGCAGCCACTGGACTTAACCTCCTGAGTGGATATTGTGTGGACCTGATCAACATTACAGGAATACACGTCCCCCTGCAGGCTCCGCCCCACTTCACCCCAGATGAGGTCGCCACTGTGACCCTGTGGGGACTGGGGTCTCTGATTGCCTACTGGCTGCTGTCCCTGGCCCTGCGACTGGTGGGCGGCATGCTGAGGCAGGTCCTGTGGCTGCTCAAGCTGGCCCTCTTCCTGTGGGCCTTCCTGTCAATCTTATACCGTGTGGAGGACCCCTATCACAGGGGGGTGCTGCTGGCGGGACTGCTCTGTATTGCTGCACTATTTGGGGGATGGGGTGGGAACCATGGCAACCCTAAACTGGAATCTCGGGTGTTAGGCCTGGAGAAGAAGGCCTctcaaaggtcaaaggtcatgcCACTGATTAAGAGCCTGTGCTCCAGCTGA

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015617 True 1449 mRNA 0.59 5 14089967 14096267

Neighbor

gene id symbol gene type direction distance location
AMCG00015616 NA coding upstream 96878 13985543 ~ 13993089 (+)
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding upstream 255221 13832595 ~ 13834746 (+)
AMCG00015609 NA coding upstream 267995 13802481 ~ 13821972 (+)
AMCG00015607 NA coding upstream 373145 13689090 ~ 13716822 (+)
AMCG00015600 NA coding upstream 482712 13598286 ~ 13607255 (+)
AMCG00015618 NA coding downstream 8061 14104328 ~ 14112925 (+)
AMCG00015619 NA coding downstream 44855 14141122 ~ 14146970 (+)
AMCG00015625 NA coding downstream 125329 14221596 ~ 14234664 (+)
AMCG00015629 ndufs8,ndufs8a,LOC107679876,LOC107746464,LOC107674223 coding downstream 357250 14453517 ~ 14456893 (+)
AMCG00015630 NA coding downstream 366393 14462660 ~ 14467684 (+)
G99068 NA non-coding upstream 24829 14051495 ~ 14065138 (+)
G99056 NA non-coding upstream 156464 13925248 ~ 13933503 (+)
G99053 NA non-coding upstream 171939 13917595 ~ 13918028 (+)
G98918 NA non-coding upstream 279028 13791042 ~ 13810939 (+)
G98901 NA non-coding upstream 492252 13579724 ~ 13597715 (+)
G99093 NA non-coding downstream 30354 14126621 ~ 14152625 (+)
G99120 NA non-coding downstream 175114 14271381 ~ 14425466 (+)
G99125 NA non-coding downstream 220133 14316400 ~ 14324233 (+)
G99136 ankrd13d,LOC108424219 non-coding downstream 289866 14386133 ~ 14387285 (+)
G99138 NA non-coding downstream 292153 14388420 ~ 14390665 (+)
AMCG00015608 NA other upstream 205296 13881425 ~ 13884671 (+)
AMCG00015602 NA other upstream 476675 13576196 ~ 13613292 (+)
G98884 NA other upstream 642688 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 652820 13433051 ~ 13437147 (+)
G98878 LOC101159514,LOC106941902,LOC105028768 other upstream 660667 13423880 ~ 13429300 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other downstream 678 14096945 ~ 14100855 (+)
AMCG00015657 NA other downstream 952656 15048923 ~ 15200978 (+)
G99475 NA other downstream 1217769 15314036 ~ 15314414 (+)
G99541 NA other downstream 1700683 15796950 ~ 15801634 (+)
G99624 NA other downstream 2034777 16131044 ~ 16131387 (+)

Expression


Co-expression Network