AMCG00015618


Basic Information

Item Value
gene id AMCG00015618
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14104328 ~ 14112925 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015618
CGTTGACCCGTTTCCGGCGAGCGCAGacagactgagacagagagagagagacggagacggGGGATAGAGAAAGAGACCAGACACCATAAATACAGCAGCACAAGAGTAAGCAATACGGCCCCGATCCCGACATAATATCTGGTAGACCTTTCAAATTCTGTCTGGGACCAAAGATGTCAGGGTTAAAGCGCCCTGGTGATCCCTCGACCTCCGCCCCCCCTGAGAAGcggagggagcgagagagggaggaggcagaggaggggGGAGCTGGGGGTGGCAGTACAGCAGTGGAGACGGTCATCAAACTGGGTGGAGTGTCTAACACTGAGGAGCAGGATATCCGTGCCCTGCAGGTGAAGAACAGGAAGCTGGGCGAGTCTCTAGACCAGCGGCAGtttGATGAGAATTTGCGTCTGGTTGGCCGACGGTATGACATTGATGCGGACGTTGGTGACCACCTGACAACCCCTGAGGGGCGAAGTCTAAAGCCAGAGACACCGGAGCCAGATGGCGACAGCAACCAGGAGCGAGGGAGAGACTGCCGGAGCCAAGGGGAGGCAGTGCAGTCATTCTTGGCCACACTGGCCAGCAGCAGCACGGAGGAGATGGAGGCGGAGCTGCAGGAGAGGGTGGAGTCCAGCAGGGCGCTGGCCAATCGTGTGGCAGAGATCTATGACCGGCTGAAGGGCACTGTGGACCGACTGGAGAAAGAGCTGGGGCCAGAGAGCACTATGTGGCAAGCAGTGTCCCAGCTCAACACTCTGCTGTCCAGGGAAAATGAGAGACTCCAGCAGCTCACTGACCAACTGCAGCTCCGGCACCAGAGCATGACCTCAGAATCGCAGTCGCTGGCACGGGCGGGGCAGTGTGCGGAGGGCCGTGTGGGGGAGCTGCAGGGCCGCATCGAGGAGCTGCAGTGGGACATGGAGAAGATCCGCCGTCGAGAGAACCGTCTTAACGCACACCTGGGGGAGGTGctggagagggtgaaCAGCAAGGGCTACAAGGTGTGCGGGGAGGCCAGCAGTGTGTGTGGGACCATAACCATCAACAAGAGGAAGTTTGAGGAGATGAACAGTGAGCTGGAAGAGAACAGAGAGCTGGCGGAGAACAGGCTGAGTGAGCTGCAGAGACTGACCCAGGACCTGCAGCAGATCAGTCAGGAGAACAACACCATGAGGgtggagCTGTGCTGCCGTGCTGAGGGGGTTGTGAGGGACTCTGCAGAGTACCGCTGTCTGCAGTCCCAGTTCTCTaATGACGAGGTGGGGCTGCAGAGGAAGGTGCGCACAGAAGTGATCCAGCTGGAGGACACACTGGCGCAGGTGAGGAAGGAGTACGAGATGCTGCGCATCGAGTTCGAGCAGACGCTGGCGGCCAACGAGCAAGCGGGACCCATCAACCGGGAGATGAGGCATCTGATCAGCACCCTGCAGAACCACAACCAGCAGATGAAGGGAGAGGTGCAGAAGTACAAACTGAGGCTGAGGGAGGCCCAGAGTGAGCTGAGCaagGCCCGTGCCGTGAAGGGCAGCTCCCTCCTCCAGTCGCAGTCCAGCACAGAGCTGGATGTGAAGGAGGAGACAGCCTCCCCCCTCACCCCTTCCACCTCCAGTGACATTACCatcaagacagagtcagagccAGGCCCAGCCACACCCACCACCACAGgattcTCGGTGAAGGTGGAGCCAGGCACAGAGAGCGAGGGAAGCATaaaagaggaggagagggagaaggccCGGGGAGGGGGTGCAGCTGtgaaggaggagagggagaggactgGCTCCAGCAGCCAACCAGACGATCTGGGCCCTGAGCGCTTGGCTGTGATTGGAGGAGCCAAGAGGAAGGAGGAACAGAGGGACAAGGTTCAGCTTATGGCTGCTGAGCGCAAGGCCAAGAGTGAGGCAGAGGATCTGAGGCAGCGCCTGcgggagctggaggagagggagaggagggaggggaagaaGATGGCTGACGAGGAGGCGCTGAGGAAGATCCGTTCAGTTGAGGACCAGATCGACACTCTGAACAAGAAGCTGTCCCTTGCCAAGCAGgaagAGGAGGCCCTACTCAGTGAGATGGATGTGACCGGTCAAGCCTTCGAAGACATGCAGGAGCAGAACATCCGGCTGATGCAGCAGCTGAGGGAGAAGGACGACGCCAACTTCAAGCTCATGAGCGAGAGGATCAAGAGCAACCAGATCCACAAGCTgctgaaggaggagaaggaggagctgGCCGACCAGCTGCTCACGCTCAAGACACAGgtggatGCTCAGCTGCAGGTGGCACTGGAGTCGCTGCAGCAGTCTGAGGAGCTGCGTGTCCAGATGGACAGTGTCCAGGTCCGGCTCAACGCCGTCAGGGAGGAGGTCATCGAGAACAGCATCTCCCGCGAGAAGGAGTCCTTCAATGCCCGCCGAGCACAGgaggaTATCTCTAAGCTGCGCAGGAAGCTGGAGAACGCCAAGAAGCCAGAGGACATCCCCAACTGTGACGAGATCCTTAATGAGGAGATTAATGACTATAAGgcACGGCTGACCTGCCCGTGCTGTAACTCGCGGGTGAAGGACGCTGTGCTGACCAAGTGCTTCCACGTGTTCTGCTTCGAGTGCGTGAAGACCCGCTACGACACGCGCCAGAGGAAGTGCCCCAAGTGCAACGCTGCCTTCGGGGCCAATGACTTCCACAGGATATACATA

Function

GO: NA

KEGG:

id description
K10696 BRE1; E3 ubiquitin-protein ligase BRE1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015618 True 2708 mRNA 0.59 21 14104328 14112925

Neighbor

gene id symbol gene type direction distance location
AMCG00015617 NA coding upstream 8061 14089967 ~ 14096267 (+)
AMCG00015616 NA coding upstream 111239 13985543 ~ 13993089 (+)
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding upstream 269582 13832595 ~ 13834746 (+)
AMCG00015609 NA coding upstream 282356 13802481 ~ 13821972 (+)
AMCG00015607 NA coding upstream 387506 13689090 ~ 13716822 (+)
AMCG00015619 NA coding downstream 28197 14141122 ~ 14146970 (+)
AMCG00015625 NA coding downstream 108671 14221596 ~ 14234664 (+)
AMCG00015629 ndufs8,ndufs8a,LOC107679876,LOC107746464,LOC107674223 coding downstream 340592 14453517 ~ 14456893 (+)
AMCG00015630 NA coding downstream 349735 14462660 ~ 14467684 (+)
AMCG00015636 NA coding downstream 388829 14501754 ~ 14502659 (+)
G99068 NA non-coding upstream 39190 14051495 ~ 14065138 (+)
G99056 NA non-coding upstream 170825 13925248 ~ 13933503 (+)
G99053 NA non-coding upstream 186300 13917595 ~ 13918028 (+)
G98918 NA non-coding upstream 293389 13791042 ~ 13810939 (+)
G98901 NA non-coding upstream 506613 13579724 ~ 13597715 (+)
G99093 NA non-coding downstream 13696 14126621 ~ 14152625 (+)
G99120 NA non-coding downstream 158456 14271381 ~ 14425466 (+)
G99125 NA non-coding downstream 203475 14316400 ~ 14324233 (+)
G99136 ankrd13d,LOC108424219 non-coding downstream 273208 14386133 ~ 14387285 (+)
G99138 NA non-coding downstream 275495 14388420 ~ 14390665 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 3473 14096945 ~ 14100855 (+)
AMCG00015608 NA other upstream 219657 13881425 ~ 13884671 (+)
AMCG00015602 NA other upstream 491036 13576196 ~ 13613292 (+)
G98884 NA other upstream 657049 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 667181 13433051 ~ 13437147 (+)
AMCG00015657 NA other downstream 935998 15048923 ~ 15200978 (+)
G99475 NA other downstream 1201111 15314036 ~ 15314414 (+)
G99541 NA other downstream 1684025 15796950 ~ 15801634 (+)
G99624 NA other downstream 2018119 16131044 ~ 16131387 (+)
AMCG00015682 NA other downstream 2320518 16433443 ~ 16457842 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000110_03095980_03103572 RNF20 coding CI01000110 null 3095456 ~ 3103572 (-)