AMCG00015619


Basic Information

Item Value
gene id AMCG00015619
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14141122 ~ 14146970 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015619
TAACGACCCAAGATGGCCGTGGTTTCGGTTTGTTGCCTCAGCGTCGGAAAGTTGTGACTCGTATTCCTCAGGACGTTGTGTGTGTTTCCAACCAAACAATATTAACTCACAGAACAGGTTCCTATGAAACAAGAAGCGTTACCGACGGTCGATATAGCCCCCAAAACGACAACATCCATCTGAGactGGATTTCAATGGAATAGTGTCAGTGACTGACCGCAAACCCCAGGAGCCCTGAACCAATGGAAAAGCTGCGGGAGCTCAGCCAGTCCGAGCTGCAGGCTCTGCTGGACAGCCAGGAAGGAGTGGAGTCACTGGTACTGGAGTCTGatgagacacTAAGTAGACGAGTGCGAGTTGAGaagctgcaggagctgctggagagGAAGAAGGAGGCACAAGGTGGGGCTGGTAGTCAAGGGGAGGTGACATCACAGCCCTTGCCGTCAACGCCCTGGCCACAGCAGAGAATAGATGAGTCTCgagaacagcaacagcagccaCAAGAGAGAAGTGCAGACTTCAACTCGCCCAACTACAACTCCCAGCAGCCATCCAACGCTGCCTCCTTTCCTCTCCCGTACCCCTCCTCCCCCCAGAAATCCCAAATGCAGGGCCCCACTGCACACGGCCCACTGCCCCCAGCTCCCTTCCCTGGATTTCCGAGCCAGGGCTACCCTTCCCAGGGTATGCAATCCACTCCAGCCCCAGGCTACCCCTCGCAGCCAGGCCCCGGCCCTGGTTTCGGATCCTCCTCATGCCCCTACCCAGTACAGCCTGGATTCCCCAACCCGCAGGGGGTCCCGTTTAGTCAGTACAACCCCCCTTCCCCTGGGTTTGGATACCCCCCTGGTCCCAATGTTGGGCCAACCCAGTCCCCTACTGCTAGGCCTGGTTACTTCGGCGCTAGTTATTGGATGCCCAGACCTTATTCCTAG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko04120 Ubiquitin mediated proteolysis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015619 True 939 mRNA 0.57 5 14141122 14146970

Neighbor

gene id symbol gene type direction distance location
AMCG00015618 NA coding upstream 28197 14104328 ~ 14112925 (+)
AMCG00015617 NA coding upstream 44855 14089967 ~ 14096267 (+)
AMCG00015616 NA coding upstream 148033 13985543 ~ 13993089 (+)
AMCG00015610 LOC100701608,LOC103356189,LOC108412483,LOC103470774,LOC103146641,LOC102233014 coding upstream 306376 13832595 ~ 13834746 (+)
AMCG00015609 NA coding upstream 319150 13802481 ~ 13821972 (+)
AMCG00015625 NA coding downstream 74626 14221596 ~ 14234664 (+)
AMCG00015629 ndufs8,ndufs8a,LOC107679876,LOC107746464,LOC107674223 coding downstream 306547 14453517 ~ 14456893 (+)
AMCG00015630 NA coding downstream 315690 14462660 ~ 14467684 (+)
AMCG00015636 NA coding downstream 354784 14501754 ~ 14502659 (+)
AMCG00015639 NA coding downstream 375427 14522397 ~ 14538432 (+)
G99070 NA non-coding upstream 31802 14063929 ~ 14109320 (+)
G99068 NA non-coding upstream 75984 14051495 ~ 14065138 (+)
G99056 NA non-coding upstream 207619 13925248 ~ 13933503 (+)
G99053 NA non-coding upstream 223094 13917595 ~ 13918028 (+)
G98918 NA non-coding upstream 330183 13791042 ~ 13810939 (+)
G99120 NA non-coding downstream 124411 14271381 ~ 14425466 (+)
G99125 NA non-coding downstream 169430 14316400 ~ 14324233 (+)
G99136 ankrd13d,LOC108424219 non-coding downstream 239163 14386133 ~ 14387285 (+)
G99138 NA non-coding downstream 241450 14388420 ~ 14390665 (+)
G99149 NA non-coding downstream 262792 14409762 ~ 14448040 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 40267 14096945 ~ 14100855 (+)
AMCG00015608 NA other upstream 256451 13881425 ~ 13884671 (+)
AMCG00015602 NA other upstream 527830 13576196 ~ 13613292 (+)
G98884 NA other upstream 693843 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 703975 13433051 ~ 13437147 (+)
AMCG00015657 NA other downstream 901953 15048923 ~ 15200978 (+)
G99475 NA other downstream 1167066 15314036 ~ 15314414 (+)
G99541 NA other downstream 1649980 15796950 ~ 15801634 (+)
G99624 NA other downstream 1984074 16131044 ~ 16131387 (+)
AMCG00015682 NA other downstream 2286473 16433443 ~ 16457842 (+)

Expression


Co-expression Network