AMCG00015628


Basic Information

Item Value
gene id AMCG00015628
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 14294968 ~ 14336329 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015628
ATGGAAACCGTGTTTCCAGTGCTGGTCGAGGCAGGAGAGAATGCTGTCAGGATTTCCGCTCGCTGCACTGTACCGAGTCCTGTGGAGTGGCCTACAGACTTCTGTGAGGAGCTCTGCTCAAAGGGAGACCTGTTCCCGCTGACCAATGCCTATGAGCCCGAGCGCTTCAGACCCCTGTGCCTCGTCACTAAGACAGTGTCAATGTTCAAATCTCCGGAGTTCTGTGCCACCGAGTACAAAGTGACCAACCTGGGGTCCCACCAGTCTGGTGTGGAGGATGCTGAATTATATAAGACGGTCATCACCAAGTCAGACTTGAGAGCGTTCCTGGAGAGCAGTGGGGGTATTAACATGGACAGGCCCATGCCCAGGGAGCTGCTGGACTCGGACGGGGTGTGTGTGGTGCTGGAGAACGTTATAACCAGGAAGCAGCTGACCATGAAGGACTGTAGCAGCAGCGGGGCCAACCTGGGGGTGAAAGCCGGGCCCGTCGGGAATATGGCACTGTCAGGGTCGAGCAATAAGTCACACATAGTGTGTGTGAAGGCTGGCACTGTGCTGGCCTACAAGGTGTGTGAGATGTCGGTGAGGCCGGACGGCAGTGTGGAACTACTGGTGCTCTCCAAGGACAAAACCTCCTTCGTTCAGAAAGAAATCCAAGACCTCCCCAAGGAGATCACCCTGATCAGTGAAAAAGCAAAAGTGCTGTGA
>TU123831
CAAGGAGCTCTGCTCAAAGGGAGACCTGTTCCCGCTGACCAATGCCTATGAGCCCGAGCGCTTCAGACCCCTGTGCCTCGTCACTAAGACAGTGTCAATGTTCAAATCTCCGGAGTTCTGTGCCACCGAGTACAAAGTGACCAACCTGGTGAGGAAACCGCCCAAAAAGGAGCTAGTCCCAAAGACCATGGACTTGCCCACGGTGACAGCAGGCAGTGCCCTCGAGCTGGGGGGCAGTGCTGGGGCTGGGCTGGGGGCTGGCATTGTTGCTGTGGATGGGTCCCTGGGCATCAAGGGGTCCCACCAGTCTGGTGTGGAGGATGCTGAATTATATAAGACGGTCATCACCAAGTCAGACTTGAGAGCGTTCCTGGAGAGCAGTGGGGGTATTAACATGGACAGGCCCATGCCCAGGGAGCTGCTGGACTCGGACGGGGTGTGTGTGGTGCTGGAGAACGTTATAACCAGGAAGCAGCTGACCATGAAGGACTGTAGCAGCAGCGGGGCCAACCTGGGGGTGAAAGCCGGGCCCGTCGGGAATATGGCACTGTCAGGGTCGAGCAATAAGTCACACATAGTGTGTGTGAAGGCTGGCACTGTGCTGGCCTACAAGGTGTGTGAGATGTCGGTGAGGCCGGACGGCAGTGTGGAACTACTGGTGCTCTCCAAGGACAAAACCTCCTTCGTTCAGAAAGAAATCCAAGACCTCCCCAAGGAGATCACCCTGATCAGTGAAAAAGCAAAAGAACTTCAAGAGCTCCCCAGAGAGAAAAGCCTCCCCAGAGGGAAAGAACTTCAAGAGCTGTCCAAAGAGAAAAGCCTCCCCAGAGAGAAAGG
>TU123832
ctgtattaaccttccttcacaaacacacacacacacacacacacacacgcacgcacacgcaacacacacacacacacacacacacacacacacacacacacagacacattcttctctttctctctcccaggAAAGGAACCTgataaaaaggagaaaaataaagcaaaaggCCAACAGAAAGggggaaaaaagaaataagtACAGAAGACCAACGCACAATACCACTTGAAGACTGGAGACAGAGTTGTTCAATATACTTTCTTGAActaaacaattaaatcaaaaaccATTAAGTCAACTCCCATGAATTTTtaccatgaaaagaaaaaaggaaaaagcatcCCAGGGTGTATGTATGTCCTGAATGtatgtttcttattaaaacCTTTCTTTACGCTGGGATTACGTCTTGTCTGGTATTTTCAGAGACGTATCCAGTCACGTGATTAAAACCCATTTCGAATGTGTTTAAACATTACACAGTGCCCTGTCCCACTGATTAGTAATTCAGAATGCAGACTGTGTGTTGTTGGGATGTTAAGTTTAGGTTTACTCTTGCCTCTCAATTATCGTCCAAAGGTCAACTGCAGGTTGTGCAAAGTTAGATATAACACAGTGTACAGTACATCTGGTGGATATTGTTGCAGGGATTCACTGAATCAAATGCTCTCAGATATAGTCCGCACAACTATTTTTGAGCTTCTCCGCACTTTTCATTGTAACATTGCACCAAAAAGCACAGCATGCTTGCTGTCTCCTTTTCTAATGAAACACTGCTTCTGTGTTGATTTTGCATGTTTATTAGATTAGTTTTATCTTGAGTGGCTACAGTGATGCTTGGAGGAAAATGATTGATTTACAGGTTACAAAGCCAAACCGAGTCAATGAAACACCCTCCTTTTACTGTTTTAATCAGGAGTGATGCCAGGAGATAACAATGGAGGTTAAAAAGTCATGTCTAGAAAAACACAATGCCCAGTTTGTGATGGCGTTCTTCAGGAGCTGACGTTTGCTTCTCCTGG
>TU123834
ctgtattaaccttccttcacaaacacacacacacacacacacacacacgcacgcacacgcaacacacacacacacacacacacacacacacacacacacacagacacattcttctctttctctctcccaggAAAGGAACCTgataaaaaggagaaaaataaagcaaaaggCCAACAGAAAGggggaaaaaagaaataagtACAGAAGACCAACGCACAATACCACTTGAAGACTGGAGACAGAGTTGTTCAATATACTTTCTTGAActaaacaattaaatcaaaaaccATTAAGTCAACTCCCATGAATTTTtaccatgaaaagaaaaaaggaaaaagcatcCCAGGGTGTATGTATGTCCTGAATGtatgtttcttattaaaacCTTTCTTTACGCTGGGATTACGTCTTGTCTGGTATTTTCAGAGACGTATCCAGTCACGTGATTAAAACCCATTTCGAATGTGTTTAAACATTACACAGTGCCCTGTCCCACTGATTAGTAATTCAGAATGCAGACTGTGTGTTGTTGGGATGTTAAGTTTAGGTTTACTCTTGCCTCTCAATTATCGTCCAAAGGTCAACTGCAGGTTGTGCAAAGTTAGATATAACACAGTGTACAATATCTGGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015628 False 711 mRNA 0.55 8 14331867 14336329
TU123831 False 837 TUCP 0.56 8 14326167 14334932
TU123832 True 1022 lncRNA 0.40 2 14319467 14320716
TU123834 False 633 lncRNA 0.39 3 14294968 14320716

Neighbor

gene id symbol gene type direction distance location
AMCG00015627 NA coding downstream 21600 14256825 ~ 14273368 (-)
AMCG00015622 NA coding downstream 122369 14165698 ~ 14172599 (-)
AMCG00015624 NA coding downstream 140824 14147522 ~ 14154144 (-)
AMCG00015621 NA coding downstream 166604 14122466 ~ 14128364 (-)
AMCG00015620 NA coding downstream 176318 14113994 ~ 14118650 (-)
AMCG00015626 ankrd13d,LOC107742695 coding upstream 40426 14376755 ~ 14388739 (-)
AMCG00015633 NA coding upstream 59436 14395765 ~ 14415538 (-)
AMCG00015631 stx3,stx2,LOC103390944 coding upstream 84425 14420754 ~ 14433707 (-)
AMCG00015634 ran1,ran,LOC107588340 coding upstream 100149 14436478 ~ 14444158 (-)
AMCG00015632 NA coding upstream 109024 14445353 ~ 14446018 (-)
G99162 NA non-coding downstream 76184 14062419 ~ 14218784 (-)
G99167 NA non-coding downstream 188523 14105454 ~ 14106445 (-)
G99165 NA non-coding downstream 203153 14090037 ~ 14091815 (-)
G99063 NA non-coding downstream 256665 14034258 ~ 14038303 (-)
G99058 NA non-coding downstream 363846 13925248 ~ 13931122 (-)
G99217 NA non-coding upstream 122136 14458465 ~ 14464160 (-)
G99296 NA non-coding upstream 202342 14538671 ~ 14603977 (-)
G99289 NA non-coding upstream 206632 14542961 ~ 14624486 (-)
G99302 NA non-coding upstream 225849 14562178 ~ 14563226 (-)
G99332 NA non-coding upstream 452590 14788919 ~ 14789198 (-)
AMCG00015612 zdhhc5a,zdhhc5 other downstream 430230 13834517 ~ 13864738 (-)
AMCG00015606 NA other downstream 449291 13671315 ~ 13845677 (-)
AMCG00015598 timm10,LOC107746912,LOC107674252,LOC107556822 other downstream 826146 13458127 ~ 13468822 (-)
AMCG00015557 map3k11,LOC101463885,LOC102206973,LOC102778058,LOC100707946 other downstream 1864320 12399733 ~ 12430648 (-)
G98546 NA other downstream 2878306 11414367 ~ 11416662 (-)
G99213 NA other upstream 111382 14447711 ~ 14456695 (-)
G99286 NA other upstream 144865 14481194 ~ 14482908 (-)
AMCG00015640 LOC103356187,LOC107382365,LOC107664566,LOC107551445,LOC107556825,LOC101483122,LOC102289392 other upstream 166435 14502764 ~ 14515279 (-)
AMCG00015642 LOC102792555 other upstream 234322 14570651 ~ 14577633 (-)
AMCG00015645 dtx4,dtx1,LOC108426833,LOC105020655,LOC106577571,LOC106608654,LOC107683563 other upstream 344465 14680794 ~ 14738274 (-)

Expression


Co-expression Network