AMCG00015657


Basic Information

Item Value
gene id AMCG00015657
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15048923 ~ 15200978 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015657
GCGCCTACACTGTCACCGCGACCAGAGGCGGCACCGCCACCCGAGTCCCCCGCCCGGCTGCCAGTCCAGCCGCCACACAGCAGAGGCGCCGGCGCGGCCATGGCCCTGTCCGCAGCGAGCCTCCTGCTGCTTCTGGCGGCGAGCGGTGAGTCTCAGCCCCGGCGACAGAGCACTGCTGCCCGGCTCTCTGCGCGGCGCTGTGGCGCCGCTGGGACCTTGATGGAGCAGCGCCGACtggctctgtctgtctcttacGTCCCCTTTGATCTGCTCTGTGTGGAGACGCTGCGCAGTTGCATCATCTCGTCTTCCCCTCAGTCTGCAGTGAGGCTGCAGGGCGCTGTGGGGGGGGCAGTCTCTCTCCCAGCCCCAGTGTTAGACACAGGGCTCTTGAGATACAATGTCAATGTTGCACTGGTGTTCAAGCGGGAACCCCCGCTCTGCCACTCGGGCTGGGAATGTGACCGACTCTCCCACAGTGCCCTTCAGCTGCCTCTGTGCAGACTGGGCAGCAGCTGGACCTGGAGCTGTCACGAACAGAGAGAAAGCGGCTGTGAGCTGGTGTCCTCTGACAATAGGCTGTGTCCATCTCTTGTCCAGTCTGAGAGGCAGCTGAAAGCCACTGTTGGAGAGACTGTCAGTTTCCCAGCCCAAGTGACAACTCAGGGTTTCCTCAAGTACAGAGGAACTGAAACTATGGCAGCAGTGATCAATGGGCAGCTCATGCCTGTGGAGAGGTTCAAAGGGAAAGTGTTCAGAAGGACCCAGGTCAGTCTGCTGTGCTCTTTCCTGTGCTCTGTGTCCAATGGGAGAGAGGTGACACTGTCCTGgtacagagagggggaggagaagcCCCTGAACCACAGCAGCTCCCCTGATCTCAACACCAACCTGACTCTCCCTCTGGAGACAGAAGGACTCTCTCACTCCTACAGCTGTGTGGCCACCAACCCCATCAGCACTGAGAGAGTCACATTGATCTGCTCTGTGCATCTGCCCGTCTTCCCCTCAGTCTGCAGTGAGGCTACAGGGCGCTGTGGGGGGGCAGTCTCTCTCCCAGCCCCAGTGTTAGACTCAGGGTTCTTGATATATGGAGGCAGAAATATTGGAGCAGTAGTCAAAGGGCAGAGAGCCCCTGCACTGGAGGACAGCTTCAGAGGGACAGTGCTCTGGGACAGCAAGACTGGACTCTTTCAGATCACAGGCCTGGACACACAGGACACTGGGGAGTACACAGTGCAGAACACAGGACAGCAGAAGACAGTCACCGTGTTCCAGCTGACAGtgtacagtgagtgtgtgttactCACAGAGCGGAGTTACGGTCAGTGCGGTGTGAGCTGGACTGAGTCCACGAGCCACACAATTCAAGTCAAGATTAAGAACGTCATGAGGTTTAAATCCCAGCTGTGCACCACAAGACGCATCAgAGCAATAGGTCACCTGGGTCAGGCTGCCAGGGATACCAGAAAAATTGACGCCAGGGCCACAGCGACGGGCAGAGAGGAGGGCAGCCTGCCTGAAGAGCCACAGAAACATGGGTCCAGTTTTGCGTGTATTTTCATATgTACGAAACTGTGCAAGAAGGTGAGTGTCACATTCCAGTACCTGGAGGTCGGCTGCCAGGTAGAGCTGAAGGAAGTCAAGCCAGAGTTGGTGGCATTTAAACCGATGCTGGACTACACCTTACTGGAGCTGAAGTCCAAGGCTGACCTCTCAGCATCTCTGCTGCGGAGATTCGACCACCCTCCGACCCATCTGTGTGGATCACCCGTGTTGGACGAGTATGGGCGACTGGTGGGAATGCACACAGGGGGGTACACCTATAAGCCCAAGGCCAAGGGCAAAACCCAGAGCGTCATCAAGGCTGCGGAGCATGCGAGGGAAAGGACAAGGGGAAGCGAGACAGACAGAAGAGACTACCTCTGCATTCTGCTGAGTTTGGTGGAGACGGAGTTTGACACTGGGGAGCTGGGGGCCGTGCTGACCGAGCTGGCCAGTACTGAAGAGTTCCAGGGGGGGCTGAAGGAGCTGTGTGTAGGGATGAACTGGGGTGAAAAGGGAAGTTGGCTGCCAGGAGATGGGGTGACAAGTGTGGAAAGCTTCCTTATGTTTCTCAAGAGATGTGCTGAGATggggaaggaaggagggagaggggagcaggaggagggagATCATGTGACTGAGGAAATGGACCAGTCTCCCGAGGAGCCCATGCTTTTGGAGAACAGTGGC
>TU124057
AAACGTCTCAGACACAACAGTGTTCCAGCTGACAGTGtacaACCGTGTGTCCAAACCTCAGGTGTTCAGAAGGACCCAGGTCAGTCTGCTGTGCTCTTTCCTGTGCTCTGTGTCCAATGGGAGAGAGGTGACACTGTCCTGgtacagagagggggaggagaagcCCCTGAACCACAGCAGCTCCCCTGATCTCAACACCAACCTGACTCTCCCTCTGGAGACAGAAGGACTCTCTCACTCCTACAGCTGTGTGGCCACCAACCCCATCAGCACTGAGAGAGTCACAGTCAACACTGAGGAGCACTGCTTCAGTAAGTGACTGAGAAGATACTTGCCTTGTGGGTAACTGTGCTCCCATTGTGTCTACACTATAAccccagtgtgtctcagtgctgtgtctgtgtgtctacaCTATAAccccagtgtgtctcagtgctgtgtcagtgtgctgtagtgtgcagtcagtgtgtctaCACTATAAccccagtgtgtctcagtgcaaTGTCAGTGTGTCTACACTATAAc
>TU124082
TTCCTAGTATTGGAGTAGCTGGACTATCTCTGCAGGAATAAGTGCTGCACTGACACAGTGAGAGAAGCATTGCAGGACAAGGTGGGAGGAGCTGGACAGCTTGGTGGGGCCAGTTATAAAGCTGCAGCCTCTAGGGTTGAGTCCCACTGAAACAGAGACACTTCACACAATGGGATATATAAGGGTCTTTCTGCTGTGCCTCGCCTGCTTCTGTGGGCTGTGTCCATCTCTTGTCCAGTCTGAGAGGCAGCTGAAAGCCACTGTTGGAGAGACTGTCAGTTTCCCAGCCCAAGTGACAACTCAGGGTTTCCTCAAGTACAGAGGAACTGAAACTATGGCAGCAGTGATCAATGGGCAGCTCATGCCTGTGGAGAGGTTCAAAGGGAAAGTGACCTGGAACAGCAGCACTGGACACTTCCACATCACACAGCTCAACACN
>TU124090
CATTCTAGCATCTGAAATCAGTGTTGCGTTGTGAGACAGCAGCTGTAGGGAATATGAAACAGGATCAGTGACAAAAGTGTTCACCTCCTGCAcaaacttgtattattatttgatttcttagcagacactgttatccagggtgactaacaattgttacaagataccaccttattttttacatttaccccttgatacagctgggcatttactggagcaatctaggtaaagtaccttgctcaggggtacaacagcagtgcccccacctgggactgaacccacacgCCCACTGCACACTACTGCCCCAAATAAGGGCCCTGAGGTGTAATGAAGGGTGAGACACGATGCCAGTGTTGAGCACATGCGCACTGCAGCTGAACCCACCGCTCGAAGCCCAGTTGCTGAGGCCTGGTGGCGCTGCTCCCCCTAGCGCTCCGAGGCCgccatcacacacacagggcgCTGCAGTGAGAGCGCCAGTGTAACTCAGAGCTGCTGAAGCGCTGGGGCTGCGAGCTCAGACTCAGAGACACCCGAGTGAGCAGAGCCACTGCCAGCCgccatcttcatcatcatcgtcGTCATCATCACTGCAGCAGGGCGCAGCGGCGGCCAGTGTCGTGGGGTCAGTCGCAGGCATCATCTCGTCTTCCCCTCAGTCTGCAGTGAGGCTGCAGGGCGCTGTGGGGGGGGCAGTCTCTCTCCCAGCCCCAGTGTTAGACACAGGGCTCTTGAGATACAATGTCAATGTTGCACTGGTGTTCAAGCGGGTGTTCATTGAACNNN

Function

GO: NA

KEGG:

id description
ko04072 Phospholipase D signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015657 True 2235 mRNA 0.58 13 15162941 15200978
TU124057 False 525 lncRNA 0.52 2 15180850 15181975
TU124082 False 439 TUCP 0.51 2 15048923 15179850
TU124090 False 783 lncRNA 0.54 2 15162058 15163883

Neighbor

gene id symbol gene type direction distance location
AMCG00015650 NA coding upstream 39414 14992880 ~ 15009509 (+)
AMCG00015653 NA coding upstream 80111 14966603 ~ 14968812 (+)
AMCG00015648 NA coding upstream 157980 14830842 ~ 14890943 (+)
AMCG00015646 NA coding upstream 241525 14720074 ~ 14807398 (+)
AMCG00015643 NA coding upstream 432167 14609879 ~ 14616756 (+)
AMCG00015656 NA coding downstream 4612 15205590 ~ 15214257 (+)
AMCG00015661 NA coding downstream 59063 15260041 ~ 15269845 (+)
AMCG00015663 NA coding downstream 112575 15313553 ~ 15348690 (+)
AMCG00015665 NA coding downstream 510214 15711192 ~ 15728592 (+)
AMCG00015668 NA coding downstream 627693 15828671 ~ 15902686 (+)
G99350 NA non-coding upstream 141680 14905607 ~ 14907243 (+)
G99342 NA non-coding upstream 168848 14879756 ~ 14880075 (+)
G99325 NA non-coding upstream 272462 14776098 ~ 14776461 (+)
G99259 NA non-coding upstream 430313 14618251 ~ 14618610 (+)
G99232 NA non-coding upstream 498475 14546997 ~ 14550448 (+)
G99384 NA non-coding downstream 47271 15248249 ~ 15271657 (+)
G99566 NA non-coding downstream 701473 15902451 ~ 15959723 (+)
G99644 NA non-coding downstream 1008465 16209443 ~ 16209643 (+)
G99662 NA non-coding downstream 1094847 16295825 ~ 16296030 (+)
G99697 NA non-coding downstream 1257882 16458860 ~ 16504418 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 948068 14096945 ~ 14100855 (+)
AMCG00015608 NA other upstream 1164252 13881425 ~ 13884671 (+)
AMCG00015602 NA other upstream 1435631 13576196 ~ 13613292 (+)
G98884 NA other upstream 1601644 13445525 ~ 13447279 (+)
AMCG00015591 LOC101069382,LOC104961169,LOC107581227 other upstream 1611776 13433051 ~ 13437147 (+)
G99475 NA other downstream 113058 15314036 ~ 15314414 (+)
G99541 NA other downstream 595972 15796950 ~ 15801634 (+)
G99624 NA other downstream 930066 16131044 ~ 16131387 (+)
AMCG00015682 NA other downstream 1232465 16433443 ~ 16457842 (+)
AMCG00015687 NA other downstream 1293714 16494692 ~ 16498531 (+)

Expression


Co-expression Network