AMCG00015671 (patl1)


Basic Information

Item Value
gene id AMCG00015671
gene name patl1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 15962359 ~ 15986250 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015671
GGAATAACAGACGACCCCATCGCGGTGCACGCTCCCGCCTCGGGTATTGAGTGTGCGACGTGCGCGGCCACGACAGTGAGCCTCCTGCCTGTCACGTCTTCAGTCGCGGCGGCGGCGCAGCTGCAGTGACGCTCTTCGGACGCTGGTGCGGTGCgggcgagagagggagagagaggcaggaatCACCGCTATTAATGTTTCGCTTTCAGtctctggaTGATGACTGTGccctggaggaagaggaggaggagggaggaggggtggCTGATGAGGAAGATGACATAGACCAGTTCAACGATGACACATTTGGGGCTGGAGCTATTGatgaCGATTGGCAGGAGGAGCACAAGAGATTGGCAGAGCTGGACGAAAGAGGCAGGGGGGCCATTGTGGGGGGTGTGGGACTGAGTGGCGTACTCCCCTCTCACCCGGCTACGGCcaaccctccccaccccccccactcctcctccagcctccccctccctccctcgctctctctctcagggcttgaagaggggggggggggcagtggttCCGTTCTTGCTGACAGCCTATCACGGCTTATCCTGGATGTTGACCCTGGGGTCATTGGGGCTCGTGGGGGGTCAAGTGTTACCGCCTCctcccacctccaccaccaccactctcAGCCCTcagctcctcctccccctctcctccctccttcctcctcctcctcctcctccccctccccctcttcctctctgctcAGCTATCAGCATCACCAGCACCTGCTGCACCATTGCAACACAGCACCTCTGCAGGTTAGTTCTCACAGCATCTGGGAGGGCAGTCTGGGCTTTGGACCGGTCAGTGTGTCCCCCGGTCTTCTGATGGAGGACAGTCCTCTCATGTCAATCATCAAGGAGGTGGGGCTTCCCAATAGGCCTCCAATAAGGGGGGAGGAAGGCCGAGACCTGTCCGAGAGAGTCCCGCCCCCTAGGTCATCTTCGCCTGTGATTGGCAGCCCACCAGTCAGGGCGGTTCCCATTGGGACACCTCCCAAACAGCCAATTGGCCACGGACTGAATCAGCAGATACAGAGAGCACAACTCATATCTTCACAGAGTGCTCTCCCCCCCAATGCCTTCTCTCGGCCAGGTGGTGGCCCCCCTCCTCCTGCCCaccccccttcctctctcctctccaacAAGCCTCTCCTggctggaggagggggagggcttGGTGGAGGATTCCGGCCATTCTTTGGGCAGCcgccaccgcccccccccccccatcgcGGAGCCCTGCGTCCCGATACCACCCACCTGCACCCCCAACACAGGAGACTGCTGACCCAGAGACTGCAGAACAGAGGggaCATGTCTCGGGGGGGCCCGGGGCAGCGGGGGGGCCCGGGGCAGCGGCGAGAcagggagcgggagagagatCCGTACAGTAACCTGATGACTCCGCGAGAGAAGGAGTGGGTGGCGCGCATACAGATGATGCAGCTGCAGAGCACTGACCCCTACCTGGATGACTACTATTACCAGAACTACTTTGAGAAGCTTGAGCGTCGTGGGGCCGGGGAGCCCTGCCGTGGCGGGGAGGGGCGCCGTGAAGTCACACGCCTGATCACTCCCCAGGTCACCCGCCTGGAGCACACCTACCGCCCAGTGCAGTTTGCCGGCTCTCTGGGGAAGCTGACCGTCTCCAGTGTCAACAACCCGCGCAAGATGATCGACGCTGTCGTGACCAGTCGCTCTGACGACGaggaaaagagagagaagcaggtTTGGAATAAAAGACGACAGATTCTGTACACAGTGGAGAAGATGTACAGTGTGCTGCTGGAGGTGCAGGACTTTGAGAAGAGGTTCCTGCAGACGCCAGAGGAGCAGAGGGAGAGTCTGCTGGAGCAGCACAGGACCCACACTGAGCAGCTGTACagcagcctgagagagagggactggGACAGCAGgatCAATGATGAGCTCTTTGTACAGATCATGTCTCTCAGGAAGGGGAAGCGCCTCATTGCCAGGCTTCTCCCCTTCCTGGGCGCGGAGCAGGCGACTACCATTTTTGGTCTGACCCTGCTGTACCTGGTGCTGAGTGAAGGGGAGAGACTGCAGAGCTCAGAGCCACACTGCCACCTGATGGACGATAATCGCTGTTTAAACGGCATCAGCGAGTTTCTGGTACGCACCAAACGGAAGAAGGGGGTGGTTGTAGATGAGTTTTTCCCTGACATGAAGCTGTTCATGAGCTCTGTGCAGTTTCTCATTAAGCAAGGCACAAGGCAGGAGAGCTTCACAGATCAGGAGAGGATGACCGCTAAAGGCGTCACTCAGCTGCGACATCTGCTGGACAGGGACAAACTGGGCTGGTGTAGTGCAGACAGTTTGGCCACAGTGCTGGGTCTGCAATCCTGGCGCTGTGCCGTCGGGCTACTGTCACTGGTGCGCACGGCATTGTCAGCGGACGAAACTCTGCTGCTGGAGAAGTTGTTTGAGGGGAAAGTCCCCTGA

Function

symbol description
patl1 Predicted to enable RNA binding activity. Predicted to be involved in P-body assembly and deadenylation-dependent decapping of nuclear-transcribed mRNA. Predicted to be located in PML body; cytoplasm; and nuclear speck. Predicted to be active in P-body. Orthologous to human PATL1 (PAT1 homolog 1, processing body mRNA decay factor).

NR:

description
PREDICTED: protein PAT1 homolog 1

GO:

id name namespace
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA biological_process
GO:0033962 P-body assembly biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12617 PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015671 True 2492 mRNA 0.60 16 15962359 15986250

Neighbor

gene id symbol gene type direction distance location
AMCG00015673 NA coding upstream 952 15959817 ~ 15961407 (+)
AMCG00015668 NA coding upstream 59673 15828671 ~ 15902686 (+)
AMCG00015665 NA coding upstream 233767 15711192 ~ 15728592 (+)
AMCG00015663 NA coding upstream 613669 15313553 ~ 15348690 (+)
AMCG00015661 NA coding upstream 692514 15260041 ~ 15269845 (+)
AMCG00015670 NA coding downstream 22786 16009036 ~ 16047634 (+)
AMCG00015669 NA coding downstream 68091 16054341 ~ 16057795 (+)
AMCG00015675 NA coding downstream 74094 16060344 ~ 16066517 (+)
AMCG00015674 NA coding downstream 124317 16110567 ~ 16112538 (+)
AMCG00015679 NA coding downstream 434146 16420396 ~ 16433377 (+)
G99566 NA non-coding upstream 2636 15902451 ~ 15959723 (+)
G99384 NA non-coding upstream 690702 15248249 ~ 15271657 (+)
G99375 NA non-coding upstream 709645 15191669 ~ 15252714 (+)
G99348 NA non-coding upstream 800494 15052397 ~ 15161865 (+)
G99350 NA non-coding upstream 1055116 14905607 ~ 14907243 (+)
G99644 NA non-coding downstream 223193 16209443 ~ 16209643 (+)
G99662 NA non-coding downstream 309575 16295825 ~ 16296030 (+)
G99697 NA non-coding downstream 472610 16458860 ~ 16504418 (+)
G99742 NA non-coding downstream 549835 16536085 ~ 16536332 (+)
G99745 NA non-coding downstream 551987 16538237 ~ 16539381 (+)
G99541 NA other upstream 160725 15796950 ~ 15801634 (+)
G99475 NA other upstream 647945 15314036 ~ 15314414 (+)
AMCG00015657 NA other upstream 761381 15048923 ~ 15200978 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 1861504 14096945 ~ 14100855 (+)
AMCG00015608 NA other upstream 2077688 13881425 ~ 13884671 (+)
G99624 NA other downstream 144794 16131044 ~ 16131387 (+)
AMCG00015682 NA other downstream 447193 16433443 ~ 16457842 (+)
AMCG00015687 NA other downstream 508442 16494692 ~ 16498531 (+)
AMCG00015703 rps3a,LOC106592945 other downstream 1112209 17098459 ~ 17131775 (+)
G100007 NA other downstream 2333806 18320056 ~ 18325904 (+)

Expression


Co-expression Network