AMCG00015678


Basic Information

Item Value
gene id AMCG00015678
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16453984 ~ 16461379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015678
caaatacacaaaacaattactgtattttttcataagtttaaaataacaattcaaaacaagatttttattattaatcattattaataattatgtacGTCACGTCAAACACATATGCTTAAAGAACTACGCTTCCCACGTGTTTTACTGGCCAGCCAGCCAGGGGGCACTTCAGAGAGACATTTTATTCGTGTCTGGGAGTTGTAGTTTTTCTTATACTCCCCAAGGCAGGTCCTCGCCGCTAAAACTACACTCCCGTCAGGCCACGCAATTGCGAGACTGTTTGGGTAGAACGAGGGGGggacttgtgtgttttttccgaGCGTTCGGTTCTTAAAGGAGAAGCGACACAAAGACAGGCCGCCCGACTGTACTGAGGCGCCCGGGCACTTAACGGGGATCTATCGCTTTAAGACTGCAGAAAAACGGGTATCtggggctttaaaaaaataataataacaataataataaccaaaaaaaattaacaacatCTTTAAAACTCTCtcacaaaacatacaaacacgGGCGGGATTTACAATTACTGCAGTGGTGGTTACAGAGCAGGAGAGGGCgaatctatatttatattaatacagaGTTATTCGGGTCTGTACAAATGTGTGCAAGCGGGTCGTAGAAGCGCACTCTTGcgaaatcaataatacattggAAAAAGATCATAGGTGTTCAAGGCCGCCCCAGAGGGAGCGGGGAGCGGGGCTCATGAACTCTGTTTCCACCAGGGCTGGGGGCGCTGGGGCCGGGGGAGGCTGCGAGCGATCACAGGCCGCTCTGCCCGGGGACCCCAGTCCAGCACCGGCCCAGGGCAGAGTGTTGCGAGAGCGGGGCGCCGGCCGACTCCACGCCTCGGCTGCGGTCACGGCCTCGGACGAGCCTGGGTCCGGACGGGTGCTGAGAGAGCGGACCAGCCGGGGGGTGGCTGTGTCGGGAGAGAAGAGGGCCGCCGACAGCGGGGCCCAGGCAGCCGCCCAGGCCCAGGCCGCTGACGGACCTGCTGCGGCCGCCGCTGCTCGCCGGAGGAAGGCCGAGTACCCGCGCCGCAGGAGGAACGCGGGAGCCCGGGCAGAGAACTCGGGAGAGACCCAGGCTGAGAGAGGCCCAGCGGAGCGttctgAAGACAAGCAAGACTCTACAGAGAAAGtAGAGgactctctccctcgctctcgtCCCTCTCGGACCCGCCGCCCTCGCGCCCCCCCACGGCACAGAGAGCCcctcccccgcagccccccagCACTGGTCTGCAAAGCTGAGCCTGATCCAGAGACTGCGGGATATGGaggcACAGTTGAGGATCTGCTGTCCAGAGCAGGAGTGAGtgaggaggaggatgatGTGGTGATCAGTGAGGAAGACCCCCCCTTCAGAGACGACCCCAAAGACCAGAACTACAaaccagagacagagagGGACCCCCCCAAGCCTCGCCGGCGGCCCCCCAAGACTaaggaggagaggaggccaCCTGAGAtcaagacagagggagagaaggagggagagagggaacgAGAGAGGCAAGGAGAGATCGACGTGAAGCAGGAGAACGAGTTTGGGGAGGAGAGCGAGCCACCCAGGAagaGGGGGCGGCGGCGGAAGGATGACAAGAGTCCTCGTCTTCCCAAGAGACGGTACAAGGCCTCTCTGAATTGGCACATGAAGAAGCATGACGCCGATGCCTCGTACCGCTTCTCCTGCAGCCTGTGCGGCAAGCGCTTCGAGAAAAAGGACAGTGTGGTGGCGCACAAGGCCAAGAGCCACCCGGAGGTGCTCATCGCCGAGGCCCTAGCCGCCAATGCCGGGGCGCTCATCACCGGGGGTGGGGCCGAGATGGAGCTCCTGCAGGCGGGCGGAGCAGCAGGGGCAGAGGGGGCAGaggggcagggtggggggggctgtaGTGGTGCCCTGGCCCAGGCTGGGCTGAGCGACCCGGCCGGTGCTATGTCTGTGGGAGTGGGGGACCTGAATCTGGAGGCCAGTCTGGATCCCAGTCCGAGTGTGAACCCCCCTCCCACTGCCAGTCTGGATCCCAGTGCACTGAGTGTGAATAGTCTGGGTCTACAGCAACAAGAGCAACAtcagcagcatcagcagcagcagcagcagcagcaagagcTCAACTTACAACTAGAgAGCAGATACAGATTCACATTCACATGCAAGTgccccctcctgctcctgccaCCTGCACTGCTACTGCTGTCTCCCCGCAGCCTCCACTGCAggccctctctctccagcagggGGAGGCAGGGGAGAACGCAGGAGGAGGAGTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015678 True 2295 mRNA 0.58 9 16453984 16461379

Neighbor

gene id symbol gene type direction distance location
AMCG00015679 NA coding upstream 20607 16420396 ~ 16433377 (+)
AMCG00015674 NA coding upstream 341446 16110567 ~ 16112538 (+)
AMCG00015675 NA coding upstream 387467 16060344 ~ 16066517 (+)
AMCG00015669 NA coding upstream 396189 16054341 ~ 16057795 (+)
AMCG00015670 NA coding upstream 406350 16009036 ~ 16047634 (+)
AMCG00015684 NA coding downstream 19969 16481348 ~ 16483888 (+)
AMCG00015685 NA coding downstream 38318 16499697 ~ 16502783 (+)
AMCG00015689 NA coding downstream 48318 16509697 ~ 16512290 (+)
AMCG00015688 NA coding downstream 55517 16516896 ~ 16522881 (+)
AMCG00015692 NA coding downstream 107069 16568448 ~ 16569251 (+)
G99662 NA non-coding upstream 157954 16295825 ~ 16296030 (+)
G99644 NA non-coding upstream 244341 16209443 ~ 16209643 (+)
G99566 NA non-coding upstream 494261 15902451 ~ 15959723 (+)
G99384 NA non-coding upstream 1182327 15248249 ~ 15271657 (+)
G99375 NA non-coding upstream 1201270 15191669 ~ 15252714 (+)
G99742 NA non-coding downstream 74706 16536085 ~ 16536332 (+)
G99745 NA non-coding downstream 76858 16538237 ~ 16539381 (+)
G99771 NA non-coding downstream 137100 16598479 ~ 16599419 (+)
G99772 NA non-coding downstream 138822 16600201 ~ 16602947 (+)
G99774 NA non-coding downstream 144377 16605756 ~ 16605979 (+)
G99624 NA other upstream 322597 16131044 ~ 16131387 (+)
G99541 NA other upstream 652350 15796950 ~ 15801634 (+)
G99475 NA other upstream 1139570 15314036 ~ 15314414 (+)
AMCG00015657 NA other upstream 1253006 15048923 ~ 15200978 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 2353129 14096945 ~ 14100855 (+)
AMCG00015687 NA other downstream 33313 16494692 ~ 16498531 (+)
AMCG00015703 rps3a,LOC106592945 other downstream 637080 17098459 ~ 17131775 (+)
G100007 NA other downstream 1858677 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 2283508 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 3806028 20267407 ~ 20268285 (+)

Expression


Co-expression Network