AMCG00015682


Basic Information

Item Value
gene id AMCG00015682
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16433443 ~ 16457842 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015682
ATGAGAGGGAGGGGTGCAGAGGTAGAGGGCAAGAGGAAGGGGGGAAGTGAGAGAATGGAGGAGGAGGATAAGAGTGTGGGCTGCACTGTGGTGGAGATGTTGACACAGAAGCCTCCCTGGGCAGATCTTGAACCCATGGCTGCAATTTTTAAGTTTGGCAGAAAAACCGAGCTAAAGCTGCCTGTGGGCCTGTCAGACTCCTGCAGGGACTTCCTGAAGAAGGTGTTTGTGGAGGAGAAGCAGCGTCCCACTGCAGAGGGGCTGCTGAGACACCCCTTCATCCAGGGAAACTGA
>TU124530
GCTAAAGCTGCCTGTGGGCCTGTCAGACTCCTGCAGGGACTTCCTGAAGAAGGTGTTTGTGGAGGAGAAGCAGCGTCCCACTGCAGAGGGGCTGCTGAGACACCCCTTCATCCAGGGAAACTGACCAGAACCAAGGGCAAGGGCACTGGCCTGACACCAACATCTACAGTGACCAAGATCAGGACAATGACAGGAATATTTACAGTGAAAGAGATTATGACAGTGGCCATGACATGGGAGTGACAGTGACTACCAATTGACTGATATTATTCCACAAAGAATATGGGTCTGACAGCATAACAGAATAATACATTCTGTCAACATGTCAATCAGCCAGTGCAATTCTATAAAGCAGTAACAGCTCCAGTAAAATGACcagttgtaatttattttacaactatgtatttatgtattgtttattagcagatgtcATTTCATGGCAAATTACAGTTGTTATAACCTATAGGCCtacaaacagcattttaaaaagttacagtaggattaaataataaataaccctggtcctggagagccgcaatcctgcaggatttccaggtctctcttaattaccaatcaatggatatcTTGAACATTTTGCCTAATTTAGACCCATAATTgtttcaattaagcagttaacgatctgaataaaacaaaaacctgcagaccctgcggctctccaagaccagggttagccacccctgatGTATGATAACTTCAGAAGTAATCAAATTACTACATTAATAGTCAATAACTACAATCCTAATAACTGAGCCATAGAAGATaaagtacagtttaaaataaattaaggggCAGAACAAATTGGACCAGATAATATGGCAATAGTTACATCTAAACTGTTGTAGATGTAAGGCAGTTTAATTGCAGGGTTATACAGGTATAATAAGCAACAGTATAATACAGACAATTGACTCAGTTGAAACATATAGTACTGTGTCatattgaaacaaaatgtttaattaaaatgtgtttaaagccATGCAAACTGCCTTCAATAAATGgtctggaaaacaaatatataaattgtgttaaataaaaacatatatattgtatccACAATTTGTATTCTTTGTTAGAAATagcatgtgtttgtgtctatAAATCACAATCATGagtaaaacattgaaaacagcGATTTATGTCTGACAGTGTAAATTATTTGTAGGTAATGGCATAAGGTAATGGTAAGGCATACTTTCATTTAATATAACAAATCTGATTTAGCCTACACTTAATTGGATAAGGTAAtttaaaaaacgtttttttaacaaacaaaacatgtttgtaaacatgttttcatgtaatatttgtagttataatgttttacttacaaataaatgtttaaacaataaaCTCCTCAACTTCTATCCATTGCGTTATAGTCACTGTACTTCTGTCCCTGTGCAATATGGCCACCAGCTTGCATACTGCCACTCATAGAGCTGGGACATATAGGTGGGACCCATCTAGTGATTctatatgaatacaatattatttccCAGCTGTGGAATGTCTGCtgattattacaataaaatatgtaaaacaaatacaccatatacacattttctaaaaatatgtatttaatgggTTTGTTATTAtactcaaattatttttaaaattagtgATATTTATTAAGGTTTTGTCTAtgcatataaaaatatgaatgtacacAACTATGTGAgcttttatattaaacaattacaggCAATGGACAAAAATTGAGTGCATTGTTTAAACCTGCTTGAATTTTATGTCCACACTGGTGGATCCCACCCAACTGCAGAGCAGAGGAGTAAGAGTACGACACAAAGccagtataaaaaaataaaatgtatagtaatgTATTGGATGTCTAACAATATATATACGATGACAACATAAGTCTGTCACTTCATaataccaagaaaaataaaagtaatttatgtGAAAGCCTTCCCATCAGCTACCTAGGtgttctacaaaacaaaaaatgtacagcagtgCTTCAATTATTGAAATTTACCTGCAGATTTAAGTTACACATCAGTGTTTGAAACcataatctgtttttaaaatcacaaggcctattaattcattataaatacaatagcatgacatttcaaacattgtaatatacAACTGTTATTCTCAAAATAATCCTCCACCCCACCCTGCCtatttgattaataatgtaCAGGCATAGAAAATCTTACTGAAAGCCATACAGAAAATGAGTATGTGAACAttgttattctttcttttttcagccctgatataagaatatataaaaatgaaaaggtcaGTTACACAGCAACAGTTAAAAAATGAGGGGTTACAGAACAACTAGACTAAAGTTGTGGGAAAATAATTGATGAAGAACAGAAGCAGTACAGTTTTTCTTCACAATACTTTTAGACTCATTGTGTTATTGCATAAATTCACAAGCAGAAGAGttgataaaacaaacttttactGGGAATTATGTGTAAAGTGCCAATGCAGAATAGAGACTGTAGCAAATGGGCAGGAAACGTGGACAGTGAACAAATTCCAGTTCCAGTAAATGTCACACGATAGTTAAACCAGAGATTCCAGATCACATCAGAGGTAATCTCAACTAAGGTAACAGTGGTGTGTGTCATAGTGTGCATGTTCTTATGTGTAcaactgtgtttttgtgtatgcaTTTGATAATTTttgattcatatatttatttatttttactaatttCCATTATCCAGTTTCCATTATACAGCagtgtgcaaaaggtttaggcaggtgtgaaaaaatgctataaagtaagaatgctttaaaaaatagatgttaatagattatatttatcaattaacaaaatgcaaagtgagtgaacagaagaaaaacctaaatcaaatccatatttggtgtgaccaccctttgctttcaaaacagcatcaattcttctatgtacactccttctaattagtgtatttggcaatacaaaaataaagcacagtcatgcaatctccatagagAAACACTGGCAGTATTGAAgatctcagtgactttcaatgCGTCTCAGTGATAGGAAGTCAGTGTGTCacatttctgccctgctagagctgccccggtCAACCGTAAtactgttattgtgaagtggaaatgtctACAAGCAACAACAGCTCGGCCACGAAGTGgtaggccacacaagctcacagaacgggactGCCGAATGCTGAAGCACATAGCACGTAAAAATAGTCTGTCCTCgtttgcaacaatcactaccgaGTTCCAAACTGCCCCTGGAAGCTACGTCAGCACAATAACTGTTTGTCAgcagcttcatgaaatgggttttcAAAGCCAAACAgccgcacacaagcctaagatcaccatgcacAATACCAAgcgtcggctggagtggtgtaaaacTCACCGCCATTGgtctctggagcagtggaaacgcATTCTCTGGAGTGGTGAATAaagcttcaccatctggcagtccggcTGACAATTCTGGCTTtggtggatgccaggagaaagctacctgcctgaatgcatagtgccaactgtaaagtttggtggaggaggaataatggtctgggtctgtttttcatggttcaggTTCAGCCCCTTTAGTTCCACTGCTGGGAAATCTTACcactacagcatacaatgataTTCTAGACAATCATGAGCTTTCAattttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaacgcccctgtgcacaaagtgaggtccatacagaaatttGTCGAGATTGGGTTGGAAGAACTTGTTTTgaactggcctgcacagagccctgacctcaaccccactGAACACCTTTGGGATTAATTTGTACACTGACTGTGAGCCAGACCTGATCACCCAACATCagtaatgctcttgtggctgaattgaagcaaatccccacagcaatgttgcaacatctagtggaaagccttcccagaagagggGAGGCTGTTACagcagcaaaggggggaccaactccatattaatgcccatgactttggaatgagatgttggACGAgtaggtgtccacatacttttgtcCATGTAGTGTATATCTAGATACAGAATAACAGGGTTTAATAAGAACCAGTGTAATATAGGATTTTTGGTCTAATATGACATATACACCGTCATAACATTAtgtccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaaggtGATGTGttggaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacaagagcTAGACGActggtcagagcatctccaaaactgcagggTGTTCcgggtctgcagtggtcagtacctatcaaaagttgtccaaggaaggaaaagctgtgaacctgcgacagggtcatgggcagccaaggctcactgatgcacgtggggagtgaaggctggcctgtgtggtccaaTACAACAGACAAGCTAGTGtaactcaaattgctgaaaaagttaatgctggttctgatagaaaggtgtcagaacacacggtacatcgcagtttgttgtgtatggggctgcgtagccgcagaccagtcagggtgcccatgctgacccctgtccactgtccaaagtgcctacaatgggcacgtgagcatcagaactggaccacggagcaatggaagaaggtggcctggtctgatgaatcacgagttcaaggtgttggcttggcctccaaattccccagatctcaatccaatcgagcatctgtgggatgtgctggacaaacaaatatataatatatatactcacctaaaggattattaggaacacctgttcaatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015682 False 294 mRNA 0.55 2 16433443 16440435
TU124530 True 4881 lncRNA 0.39 2 16440312 16457842

Neighbor

gene id symbol gene type direction distance location
AMCG00015679 NA coding upstream 66 16420396 ~ 16433377 (+)
AMCG00015674 NA coding upstream 320905 16110567 ~ 16112538 (+)
AMCG00015675 NA coding upstream 366926 16060344 ~ 16066517 (+)
AMCG00015669 NA coding upstream 375648 16054341 ~ 16057795 (+)
AMCG00015670 NA coding upstream 385809 16009036 ~ 16047634 (+)
AMCG00015684 NA coding downstream 23506 16481348 ~ 16483888 (+)
AMCG00015685 NA coding downstream 41855 16499697 ~ 16502783 (+)
AMCG00015689 NA coding downstream 51855 16509697 ~ 16512290 (+)
AMCG00015688 NA coding downstream 59054 16516896 ~ 16522881 (+)
AMCG00015692 NA coding downstream 110606 16568448 ~ 16569251 (+)
G99662 NA non-coding upstream 137413 16295825 ~ 16296030 (+)
G99644 NA non-coding upstream 223800 16209443 ~ 16209643 (+)
G99566 NA non-coding upstream 473720 15902451 ~ 15959723 (+)
G99384 NA non-coding upstream 1161786 15248249 ~ 15271657 (+)
G99375 NA non-coding upstream 1180729 15191669 ~ 15252714 (+)
G99697 NA non-coding downstream 1018 16458860 ~ 16504418 (+)
G99742 NA non-coding downstream 78243 16536085 ~ 16536332 (+)
G99745 NA non-coding downstream 80395 16538237 ~ 16539381 (+)
G99771 NA non-coding downstream 140637 16598479 ~ 16599419 (+)
G99772 NA non-coding downstream 142359 16600201 ~ 16602947 (+)
G99624 NA other upstream 302056 16131044 ~ 16131387 (+)
G99541 NA other upstream 631809 15796950 ~ 15801634 (+)
G99475 NA other upstream 1119029 15314036 ~ 15314414 (+)
AMCG00015657 NA other upstream 1232465 15048923 ~ 15200978 (+)
G99074 aldob,LOC107588335,LOC108424229,LOC108269036,LOC103390983,LOC102232942 other upstream 2332588 14096945 ~ 14100855 (+)
AMCG00015687 NA other downstream 36850 16494692 ~ 16498531 (+)
AMCG00015703 rps3a,LOC106592945 other downstream 640617 17098459 ~ 17131775 (+)
G100007 NA other downstream 1862214 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 2287045 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 3809565 20267407 ~ 20268285 (+)

Expression


Co-expression Network