AMCG00015687


Basic Information

Item Value
gene id AMCG00015687
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 16494692 ~ 16498531 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015687
CAGAGATCGTATTATCATTCAAGATGGCTGAGTGAGTTCGCGGCCTGGGTTCCGCAGTAACAAGCAGACATCGACGATCGATTACTCGGGTCTTCGAGTATCTGAGTGAGCCTGGGCATGATCCAGACATCACTAGCAGAAGGAAAAGTTTTGGAAACAAAAGTTTTGAGGGAGTAAAACGGGCGGAATTTGAATGTCGGAAACTAGTGGAGAGTGAGCGGGCCTGGACTGCGGATGAGACGGAGAGCAGAGCCGTGGAGGAAGCATCAGCCAATGTTGGGCCAACCAACTCCAGCTCTGCCTCCCACTGCAGCAACAACAATACTCCCTCTACTGGCCAGAGCGAGCAGTGCAGCCTGAAGtaccagAACCTGgagaatgatgatgatggTGTCTCCAGCGCCATTTTCTTTGTGCCTGGGTTCCTGCTGTTGATTCCTGgagtctATCATGTGATCTTTATCTACTGTGCTGTCAGGGGCAGGAGGGGCTTCAGATTCTTCTACCTGCCCTACTTTGAGAAGTGACCTCTGGCCTTCCACCCATGACCTGTGACCTGGGGACCTTTTGACCTTTTAACCTGTGACCTGTGTTGTGCTGAATTTTGACCCCTGTGGTATAAATGTGTGAATATCGGACTTGcagccctgtctctctctgcctccgcCTCTGTGTCCCAGTCCATTCCAGTATAGTGCTGTACAGTCCCGTCCAGTACAGTATAATCCAGAACCAATACAGTGTCACCTAGTAATGGCATATATCCCAGCACACTGCAGGAGCATCATTTGTGCCAGCATTGACACGCACTTCCAGCATGGTTTCCGTGCTTCCTGATTGGGGGATTCAGATACGATCACTGGCTTTCAGGACTATATTCGTTTACCGTGTTTGTCATCTGAATGTGATAAGACTAGAGACCCACAATTCTCTGCACACCAAATGCCAGGTAGTCCGTCTGTGGGACAACTTGATAGACATATAGAGTTATAGTcttttgcaaatacaaaatatatttaaataagcacTAATGACCCTCCATACTGCAGTCCAGTGTAATtgaatacagtccagtccagtctaggTGAGTCCAGTACAGTTTGTAACACACTCGGTGTATGTATCACACACTGTGTTGTGCTGCTGTGAGCTGTGCAGTTAGCACTGAgacagggaggggaggggacGGCAGGGAGGGGTGGAGAGATTGCCTTTGAAGTAAACACTTTTCAGACGAGTGTTAATGTAGCCTGTGGCGCTGTCACCCCACTGTGGAACAACACTGACATTGTTataactgtctgtctgtctgtctctttctgtgtctgtctacCTGTTTGTACAAGTCTGTCTGTGTCCGTCCATCCGTCTGTCCAtctatttctgtgtttctttggGAGTCTGACTGTCTGCCTGGCTTTGAATCCTAAAATGtttcttgtcatttttaaacCTGTGCCAAAATAAAACTGAGGATAATGAAG
>TU124547
gggagagggagctgATGGGACTTGTCGGTTTGGATCCCTCAGCTTTGTCCGGCAGTCAGCCAATGTTGGGCCAACCAACTCCAGCTCTGCCTCCCACTGCAGCAACAACAATACTCCCTCTACTGGCCAGAGCGAGCAGTGCAGCCTGAAGtaccagAACCTGgagaatgatgatgatggtttGAGCAACTGTGGAAACACGACCTTCAATAACCTCTTCAGAatcagggaggcaggcagtgtctctctctctcagtggtcCTTCAGCACACTGAGCTCAGGCACCCAGCTGTCCTACAGAGAGTGCTTCAGCTGGACTCGTCACCCTCTGATCCTGAAGAACAGGAGAGTCGTGgttgcttcattcctcctgctGATCACTGGACTTGctcttaTATTCACAGGTGTAGCCATACAGGTGAACCCTTCTGCGGgTGTCTCCAGCGCCATTTTCTTTGTGCCTGGGTTCCTGCTGTTGATTCCTGgagtctATCATGTGATCTTTATCTACTGTGCTGTCAGGGGCAGGAGGGGCTTCAGATTCTTCTACCTGCCCTACTTTGAGAAGTGACCTCTGGCCTTCCACCCATGACCTGTGACCTGGGGACCTTTTGACCTTTTAACCTGTGACCTGTGTTGTGCTGAATTTTGACCCCTGTGGTATAAATGTGTGAATATCGGACTTGcagccctgtctctctctgcctccgcCTCTGTGTCCCAGTCCATTCCAGTATAGTGCTGTACAGTCCCGTCCAGTACAGTATAATCCAGAACCAATACAGTGTCACCTAGTAATGGCATATATCCCAGCACACTGCAGGAGCATCATTTGTGCCAGCATTGACACGCACTTCCAGCATGGTTTCCGTGCTTCCTGATTGGGGGATTCAGATACGATCACTGGCTTTCAGGACTATATTCGTTTACCGTGTTTGTCATCTGAATGTGATAAGACTAGAGACCCACAATTCTCTGCACACCAAATGCCAGGTAGTCCGTCTGTGGGACAACTTGATAGACATATAGAGTTATAGTcttttgcaaatacaaaatatatttaaataagcacTAATGACCCTCCATACTGCAGTCCAGTGTAATtgaatacagtccagtccagtctaggTGAGTCCAGTACAGTTTGTAACACACTCGGTGTATGTATCACACACTGTGTTGTGCTGCTGTGAGCTGTGCAGTTAGCACTGAgacagggaggggaggggacGGCAGGGAGGGGTGGAGAGATTGCCTTTGAAGTAAACACTTTTCAGACGAGTGTTAATGTAGCCTGTGGCGCTGTCACCCCACTGTGGAACAACACTGACATTGTTataactgtctgtctgtctgtctctttctgtgtctgtctacCTGTTTGTACAAGTCTGTCTGTGTCCGTCCATCCGTCTGTCCAtctatttctgtgtttctttggGAGTCTGACTGTCTGCCTGGCTTTGAATCCTAAAATGtttcttgtcatttttaaacCTGTGCCAAAATAAAACTGAGGATAATGAAGACAACAA
>TU124548
AGTGAGCCTGGGCATGATCCAGACATCACTAGCAGAAGGAAAAGTTTTGGAAACAAAAGTTTTGAGGGAGTAAAACGGGCGGAATTTGAATGTCGGAAACTAGTGGAGAGTGAGCGGGCCTGGACTGCGGATGAGACGGAGAGCAGAGCCGTGGAGGAAGCAtgtctgactgtctgtgattggctgcctGGTTGCCTTGGTGTTAGAGGGAGGGGTACtcaaggggggagagagggtgggggcTTGTCAGAGTTGTCATGGCGACTCAGTTCTCGATTGATGATGCATTTTCATTGGACcccgaggaagaggag

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015687 False 1484 mRNA 0.48 5 16494692 16498524
TU124547 True 1535 lncRNA 0.48 7 16496297 16498531
TU124548 False 314 lncRNA 0.53 2 16494796 16496252

Neighbor

gene id symbol gene type direction distance location
AMCG00015684 NA coding upstream 10804 16481348 ~ 16483888 (+)
AMCG00015678 NA coding upstream 33313 16453984 ~ 16461379 (+)
AMCG00015679 NA coding upstream 61315 16420396 ~ 16433377 (+)
AMCG00015674 NA coding upstream 382154 16110567 ~ 16112538 (+)
AMCG00015675 NA coding upstream 428175 16060344 ~ 16066517 (+)
AMCG00015685 NA coding downstream 1166 16499697 ~ 16502783 (+)
AMCG00015689 NA coding downstream 11166 16509697 ~ 16512290 (+)
AMCG00015688 NA coding downstream 18365 16516896 ~ 16522881 (+)
AMCG00015692 NA coding downstream 69917 16568448 ~ 16569251 (+)
AMCG00015686 NA coding downstream 73120 16571651 ~ 16575186 (+)
G99662 NA non-coding upstream 198662 16295825 ~ 16296030 (+)
G99644 NA non-coding upstream 285049 16209443 ~ 16209643 (+)
G99566 NA non-coding upstream 534969 15902451 ~ 15959723 (+)
G99384 NA non-coding upstream 1223035 15248249 ~ 15271657 (+)
G99375 NA non-coding upstream 1241978 15191669 ~ 15252714 (+)
G99742 NA non-coding downstream 37554 16536085 ~ 16536332 (+)
G99745 NA non-coding downstream 39706 16538237 ~ 16539381 (+)
G99771 NA non-coding downstream 99948 16598479 ~ 16599419 (+)
G99772 NA non-coding downstream 101670 16600201 ~ 16602947 (+)
G99774 NA non-coding downstream 107225 16605756 ~ 16605979 (+)
AMCG00015682 NA other upstream 36850 16433443 ~ 16457842 (+)
G99624 NA other upstream 363305 16131044 ~ 16131387 (+)
G99541 NA other upstream 693058 15796950 ~ 15801634 (+)
G99475 NA other upstream 1180278 15314036 ~ 15314414 (+)
AMCG00015657 NA other upstream 1293714 15048923 ~ 15200978 (+)
AMCG00015703 rps3a,LOC106592945 other downstream 599928 17098459 ~ 17131775 (+)
G100007 NA other downstream 1821525 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 2246356 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 3768876 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 6180306 22678837 ~ 22683895 (+)

Expression


Co-expression Network