AMCG00015703 (rps3a,LOC106592945)


Basic Information

Item Value
gene id AMCG00015703
gene name rps3a,LOC106592945
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17098459 ~ 17131775 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015703
ACAGATCGCTCAGATCGGAATAAACCAGAACGACAATCAAGtcaaGGACCCCTCTCTTCTATAAGAGCAGCCATCAAGAGAACAGCGACAACCAGATCGAATGCACAGAACGAGCATCCCAGGGAGAGAAGGCGGCCAGAGATAACCATCCTTTCAGCAGAACCACTGGCGACAAATTCCTGGTTTTCTGGTGCTACTGGGAGTTTTCCACCAGCACCGCCGCCCTCTCAGGGAATCTGGGGCAGTAGCATTCCAGCATCTGCACAGCCACCACCATCGTACGACCAGGTGATCAAAGAGAAGACACAGGAGCAAGTTCCTGCAACATCTATCAATGTTACTCCTCGGGCTTCCACCACTACGATTGCTACACAAACAGACTTTGAAGAAGCAGATGAGACAGCAGGCACGGGAAGTAATGTAACACTGCAGGCAATTCAAAGTGAGACTGTGCTAAGAATTGCAAGAAAACCTCCAAAACCTCCAAGACCATCATTGCTGCCATCAAAAACTAAATCAGTGGCAAGTGAAACTACGGTTGTTGCAGCTGGGTCTGTTGTGGTTTCTAAAGAGAGGCCAGTTGTCCCTAGTCGTAATCCAGTTGTCCCCTGCAAGCTACCACATGGTGCCAAAAACAGTATAGCTGAAGCCACAAATAACCCACTTGATCCACCTGGGAATCCAGCTGAATCCCTGCTAGTACCTTCTTCAGCAGTGTCTGAACAAGCCAAACCCAATGAGCCTTGCTTTGTCCCCAGTGAGTTTCCTTGTGCTCTAAACGAGACTCTAGTCATCTCCACTGATCCTCACTCAGCAGCTGACCCTGCTCCCAGGGAAGAAGCAAAGCAGCCGGTGCCACGACCTCGatccaaattacatttgaaaccaGTAACCAAAGAAGTCAAGGTACAAACACTAGTGCGATTAAAAGAAGAGTACAGGGGAGAGAGCTCTCAGGAGATCCCAGAGAGCGGGGAAATATACTCGGGTGCATATCTACAAGATCTCTTGGAGGTTTTTTCTACAGATAACCAAAGTGACCAAAGTGACCAAAGTGACGAAACTGAAGAGGACGACATGAATACCTTTGGTAGCCAAAGAAGTATCCGTGCAAAGATCCAAGCCTTCGAGAGCCAATCTAGCATAACTGGTAGCAACGAGGAAATTAAGAAACCTGAATTGCGCCCCCGTACTCAAATGTCAAAGCCCCcaattacagctgcaaaacCTTCTTTAGCTCCCAAACCTTCGAACAGAAGTTTCTGGGAAGGGGACACAGTGACAGAGTCCAAACCACTTCCAGCCATGAAGAACAGCCCTGCTTTGGTATTTCCTACGTTGCAAGGAACAGATTCTGCTTTTGATTTCAATGTAGATCCTTTCAACCTGACCAAAAATAACTATCTTCATACAGTAACAAATAATCCCACTCACTTTGGGACTGAAAGTGTGTCATTTGTTGAAAACCACATTCCAGACCCTGCACCAAGACCAGTTCTCCCAAAAAAGCCTGCAGAGATGGACTTCAAAGACGCAACTCAAACCGAAAAGTCTGTTCCTTTTCTGCCTCCACGGCAGTCTGTTACCTCTGTGGCAAAGAACTTCATGACACAGAATGAGGGATCTGCTCTTAATCAACCCACCCTTCCAGTGCAGGGAAAACCCAGCCTGGACCTATTCAACCTTTATAATCAAAATGCAGCCTCTTTCCCCTTTGGAAACAGCGCAGGGAGTGAGAGCACAGAAACCACAACTGACTTTTCTTCcaacatatttgaaaatgttccaAATCGCCCAGCTGTGTCTCGTAAACCTACAATGATCAGAGTTCCCAGCAGACCCAACAACTGGACTTCAGGAAGGCTACCCCCTAGATCCTTGGCTCAGCCCCGCTCCACCTCTGTGGTGGCACCTAAATGGCAACAGAGCCAGAAGGTGCAGAAGAAGGGGCCGGTACTACCACCCAGGCCCAAACCTGGGCATCCCCTTTACAACAACTACACACTTGCCATCCCACATGGAATTGCAGAATATGACTTTAATGGCAGGAATCCAGGGGAGCTTTCCTTCCAGAAAAACGAAGTCCTGGTGCTTCTGGAGCAGATTGAcaacaatacatttgaatgtcaAGTTGGAGACTGCAAGGGTAGAGTTCAGACGTCTTATATGAAGATCATTATACCACTGTCAAAGATGCCCAGCAACATGGAAAGATCACAGCCTGTTAGTCCTGGGGGACCCCAGAAAGAGAACAGTGGCCTACAAGTTCAAGTTTTGCATGACTTCACTCCAGAAAACCCTGATGAGCTAGCACTTCGTGCTGGGGACACCGTGTCCATGGTGGAGAGGGTTGATGATGAGTGtgGTCCGAGATGTGTGGCTCGGTTTGATTATGAAGGGGAGCAGACAGATGAGTTGTCGTTCTCTGAAGGCGATGTGATTAGGCTGAAGCAGTATGTAGACCAGGACTGGGCCAGGGGGGAATTCGGTGGCCACACAGGAATCTTTCCCCTGAGCTTTGTGGAAATTGTGGAGGATCTACCCACAGCATCAGCCCAGCAGCCTGTGCAGAACAAAATCCCCCTTCCAGGACTGGGTTCAACCCTGAGAATGAACCAAGATACTGCAAAAGCCAGACGGGCCATGGAGTCTGTGGCTGCAGAATGGGCTGTTGCTCTCTATGACTTCACAGCCCAGACAGATGAGGATCTGCCTTTTAAACAAGGGGACCACATCCTCATCACTGAGCACGTCGACTCGGATTGGTGCCGAGGGAGGCTCAATGGCAGAGAGGGCTTCTTCCCAACTGCCTTTGTCCAGAGTTCTGCAGGGTCAGCTGGGGACGGATCTTCTCACAGTAGGACTAATCGAAGAGTAAGAGTTAAAGCCCTGTTTGACTTCACTTCAGAGGCTGAGGATGAGCTCTCACTGAAGgtAGGAGATATAATTACAGACGTGGAGTCTGTGGATGATGAATGGATTTTGGGAGAACTGAGGGGGAAACGTGGTCTTGTCCCGAAGAACTATGTCCAAGTGCTGTGAgaacaattcatttaaaaacaaatgaatataaaGAGCACTGGGAGTGCATTTGAAGAAGATTGCCCTTTCTGGGTAGATGCCTTACAAGAAGATAATCAAAGAATATTGCAGAATGAACTGTTGGTGACTCGGGTCCACATCCATGCCATGCAGCCCAACATAAAAGTGACTTTATTCTCAACAAAATGCAGTATTCCTCCTTGTGAACATAACTTGCTAGTTgctattttcatacattttatgacACTAAAGACTTCAGATAATTTGTTACAGCTAATGATACTTTAAATGCTTTTAGCTGTCCTAAAAATAGCAGCAAATGCCTTCATAAATCATACAAAGAGCATGAATTCTTCTGAACTGTAACACTAATATATTGGTATTCATAGTGAACAATTCTCTAAGCACCAGccaacattaaacaattaatcaatGTGCCTTAGTACACCTACCTCCAACTACATGCTCAATACTTGCTCctacagttttattatataaatataacttacATTAATGTCTTACTATAGATTAATGTaagctatatttatatattaaaactgtagtatatataaaatgtgtaaaataaagattaatgtAAGTAAGTAAAATGGTACTTTATACTGACTTTTAATGAGAGGTAATGTCTTACAAATGCATTATATACatgcaattcaatttttaatgcaTAAACCCCTTGAATGTGCAATATTTGATTCAAATTGGGACATTTCTGGCATAATTATTTGGGTCACTATAATTAATTTGACTATTTAGaagtttccctttgtttcagCACCACCTAGTGGCTTTCTTGTTTTTGACAAGGAATTGCACGAATTTTGACATTACAATACACAATTGGTGTTTTGAGAAGTTGAATTTGTTCCAAAGATGAAATGGTAGTGATCACTCCATTGTCAATTAGGGTATGCACTGCTAATCTCAGTTTATGGAGGTTTCTATAActgtatcaaaaataaatgtggtaaTGTAATGCAAACCTAAACATTGCTTGTATTCCAACTGATCATCTgccatgtactgtattgtgtccataataaagatttttaaaaagtcaaaaaaGATCCTGTCTTTGGTTGGTTTAGTTTGCAGAGTAAGTAAACTCACCCTCCAGCAACACTGAATGCATTGTAAAAATACCCTGAACATCCCCACTCCATGACCAGAACAGGAACTGCTCACTGACTGACCGGAGGCCTTCAGTAGATCACAGCCTCACATTAAGGCTTGGAATATTTCCTCTGCCTGTTTAAACATCCAGATTttgtaaaagtatatttatcATAGCAAACAGGAGCTCTTTATAGacattgcatgtttttgtgCATGAAATGGTGGGGTCAGTTTTTTGGGGGagaatttgctttaaaatgtaaaatggcaTAGGTTATTTTTCCAAGTGATGTAGAAGCATGTACAAACCTAATGTTAAACTTGCTTAATTTCTTGTATATTTAATTCCTTATAACATGAACAGGtttccacttttgttttaaaatgcagatgtaaTTCCTTACCCAACCTTAAGAAATTCTAGCTTTCATACATTCCCATCTCTTTCAGAACCATGCTTAAGGTGGTGTCCATTATAGACTTTAATAGGGAAATTGAAAAAGGGTGGCCAAAAGTCTAATGATAAAGAACTCTGCTAAAACTGccattagaaatgttaatatgaAAGTAAACAAGTCAAGTTTCAggcttttactttttcttttattgaacTGTGCTTCATCTGAACATTTCAGACTGTCTCCTGGACTGGGGGCTCGTAGCCATCAGCCCTCTCCACTTTTGCACCAGATTCATCTCCTGCTGGCTTGGCAGTGGTGCTGGTGCCTCCTCCCTCGCCATGAAGCTCCATCAGTGTACTTACACTCAAACTTAGGCTTTTTGAGCATCTTGACCTTCCTGACGAAGACGTCGTGCAGGGGGTAGATCGACTGACAGGCCTTTTCAATGTCCTTGCCAACACTGTCCGGAATCCTCTTGTTTACAACTTCCTTGAGGTCGTTGGTCTGTACCTCCCGGGTCATGATTTCCATCATCTTTTTGCGGATCTGACGGACCTGCTGGTGCTGGGCATAGGAGGTCTTGCGGATCTGGTTGGCCCGCTTCTTGGTGAAGCCCACGCAGAACAGCCGAAGCAGGTAGCCGTCGGTTGTCTTTACATCGACATGGGCCTCAATCATAGTCTGCCATTTCTTGACCATGGAGCACATCTTGTCACGGGTGAGGTCCATGCCATGGAAGTTGGTCAGACAGTTCTTGCCTTGGACATCTTCTGTAATCAGCTTGAATTTACGGAAGGCCACCTCATCGTTCTGCAGATCAGCCAGACTGACTTCGAACACGCGTCCCTTCAGACCGTCGGAGGAGGCTTACTGGTTCCCTGTGTCCTGGTGACCAGCGTCTTCCCCAGGTTCCTGATGTTGAACATGGCTGGTGCCTTGACATCATACCAGTCCTTCTTGGAGAAAGGGTCCACCACCTTCTTTTTGGCACCTTTCTTGCCTCCTTTGGTCAGCCTCTTATTCTTGCCGACTGCCATGTTGGACACACAGAGTGAAAGAGGAGGAACATGGCGCTACCGCGAGATT
>TU124723
TAGTAAAGAATTTCCCTTacgcaaaaaaataataatcgcaAAAGCATGTTGCATGACAGGCTTGTTTTATCACTTCTTAGACAcctctgcttttgtttgttttaaactttttttttttttttttTTTCAggcttttactttttcttttattgaacTGTGCTTCATCTGAACATTTCAGACTGTCTCCTGGACTGGGGGCTCGTAGCCATCAGCCCTCTCCACTTTTGCACCAGATTCATCTCCTGCTGGCTTGGCAGTGGTGCTGGTGCCTCCTCCCTCGCCATGAAGCTCCATCAGTTTGCCCACtgcaaccacacacacacaaacagtcaaCACTCGAAAACATGCCTTTATATTCTTCTCCTGTATCAGCAAGGCTGGTCAGAAACCTTTTCATTATACCAACTTAAATGACTGCATATACATTCATTAAAGTTTAAGCGCTGCACTACTTAAGGGACACTGTGTTGTCTAATGAGCACGAGCACTTCTGGTCCTCGTTTAAGACAAGGTGGAACTGAACTGTTCTTTAGTAGTCCAGATCTTTTCATAGTTGGGTGCCAGTAAAATGGTCAATAACATGAAGCCTTTGGTTAATGTCTACCATCTAGTTATTAAAAGAACAGTTGTAAGCACCATTTTTTCACATaatgaacaaagaaaaccttaTTAGTTAGGCTCATTAGTTTAACCACTCACAAGTGCTGACCCAATTACAACATGCCTTTGTTAAAACTGGAGATTGGTTTGCATCTCTAAACCCATATTTAAAAGTGTACTTACACTCAAACTTAGGCTTTTTGAGCATCTTGACCTTCCTGACGAAGACGTCGTGCAGGGGGTAGATCGACTGACAGGCCTTTTCAATGTCCTTGCCAACACTGTCCGGAAGCTTGTTTACAACTTCCTTGAGGTCGTTGGTCTGTACCTCCCGGGTCATGATTTCCATCATCTTTTTGCGGATCTGACGGACCTGCTGGTGCTGGGCATAGGAGGTCTTGCGGATCTGGTTGGCCCGCTTCTTGGTGAAGCCCACGCAGAACAGCCGAAGCAGGTAGCCGTCGGTTGTCTTTACATCGACATGGGCCTCAATCATAGTGCCATTTCTTGACCATGGAGCACATCTTGTCACGGGTGAGGTCCATGCCATGGAAGTTGGTCAGACAGTTCTTGCCTTGGACATCTTCTGTAATCAGCTTGAATTTACGGAAGGCCACCTCATCGTTCTGCAGATCAGCCAGACTGACTTCGAACACGCGTCCCTTCAGACCGTCGGAGGCGATTTGGTTCCCTGTGTCCTGGTGACCAGCGTCTTCCCCAGGTTCCTGATGTTGAACATGGCTGGTGCCTTGACATCATACCAGTCCTTCTTGGAGAAAGGGTCCACCCCTTCTTTTTGGCACCTTTCTTGCCTCCTTTGGTCAGCCTCTTATTCTTGCCGACTGCCATGTTGGACACACAGAGTGAAAGAG

Function

symbol description
rps3a Predicted to be a structural constituent of ribosome. Acts upstream of or within chordate embryonic development. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytosol. Is expressed in lens. Orthologous to human RPS3A (ribosomal protein S3A).

NR:

description
PREDICTED: 40S ribosomal protein S3a

GO: NA

KEGG:

id description
K23714 SH3D19; SH3 domain-containing protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015703 True 5663 mRNA 0.44 22 17103671 17131775
TU124723 False 1472 TUCP 0.45 6 17098459 17131749

Neighbor

gene id symbol gene type direction distance location
AMCG00015701 gatb,LOC106602370,LOC106602377 coding upstream 105178 16972365 ~ 16993281 (+)
AMCG00015700 fbxw7 coding upstream 228100 16835026 ~ 16870359 (+)
AMCG00015698 NA coding upstream 309950 16728102 ~ 16788509 (+)
AMCG00015699 NA coding upstream 387657 16679746 ~ 16710802 (+)
AMCG00015686 NA coding upstream 523273 16571651 ~ 16575186 (+)
AMCG00015706 NA coding downstream 21500 17153275 ~ 17153478 (+)
AMCG00015705 NA coding downstream 55063 17186838 ~ 17235784 (+)
AMCG00015708 NA coding downstream 149904 17281679 ~ 17300446 (+)
AMCG00015707 lrba,LOC106602365 coding downstream 186518 17318293 ~ 17330594 (+)
AMCG00015710 lrba coding downstream 219507 17351282 ~ 17385325 (+)
G99842 NA non-coding upstream 27405 17070583 ~ 17071054 (+)
G99840 NA non-coding upstream 30869 17067161 ~ 17067590 (+)
G99839 NA non-coding upstream 65730 17032429 ~ 17032729 (+)
G99836 NA non-coding upstream 85418 17012662 ~ 17013041 (+)
G99833 NA non-coding upstream 91982 17005412 ~ 17006477 (+)
G99867 NA non-coding downstream 318309 17450084 ~ 17465514 (+)
G99915 NA non-coding downstream 468928 17600703 ~ 17600908 (+)
G99933 NA non-coding downstream 705842 17837617 ~ 17837900 (+)
G99934 NA non-coding downstream 801224 17932999 ~ 17933328 (+)
G99932 NA non-coding downstream 822710 17954485 ~ 17956630 (+)
AMCG00015687 NA other upstream 599928 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 640617 16433443 ~ 16457842 (+)
G99624 NA other upstream 967072 16131044 ~ 16131387 (+)
G99541 NA other upstream 1296825 15796950 ~ 15801634 (+)
G99475 NA other upstream 1784045 15314036 ~ 15314414 (+)
G100007 NA other downstream 1188281 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 1613112 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 3135632 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 5547062 22678837 ~ 22683895 (+)
G101061 NA other downstream 7733314 24865089 ~ 24865552 (+)

Expression


Co-expression Network