AMCG00015709 (lrba,LOC107598261)


Basic Information

Item Value
gene id AMCG00015709
gene name lrba,LOC107598261
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17416375 ~ 17447661 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015709
gCCCTTGAGAGTGAGTTTGTTTCCTGTCAGCTCCACCAGTGGATAGACCTGATTTTTGGGTACAAGCAGCAAGGACCAGAGGCCATCCGAGCCCTCAATGTCTTCTACTATCTGACCTACGAAGGCGCCGTCAACTTGAGCTCCATCTCTGATCCAGTGCTTAGGGAGGCTGTGGAAGCTCAGATACGAAGTTTTGGACAAACCCCTTGTCAGCTGCTAATAGAGCCACATCCCCCAAGGAGTTCTGCCATGCAGGTGTATCTCCTCCTGCAGACCCCCCTGATGTTCACGGAGCAAATGCAGCAGGATGTCATCATGGTGCTCAAGTTCCCGTCCAACTCTCCGGTTGCTCATGTTGCGGCCAACACCCAGCCTGGCCTGTCTGCTGCTGCAATCATCACCGTCACCGCAAACCGGCTCTTCGCTGTCAACAAGTGGCACGGACTTACTGGCCATCAAGGCTCTGTCCAGGAGCAGCCGTACCAGCTGCCTGTGGAAATCGATCCTCTGATAGCCAGTAACGTAGGCACCCACAGAAGGCAAATCACTGACCTTTTGGACCAGAGCATTCAGATCCATTCCCAGTGCTTTGTGATCACTGCTGACAACCGATTCATCCTGGTCTGTGGGTTCTGGGACAAGAGCTTCCGCGTCTACTCCACTGACTCAGgAAAATTGACGCAGATAGTCTTTGGACATCGTGATGTGGTGACATGCTTGGCGCGGTCTGAATCCTACATTGGAGGAGATTGCTACGTGCTCTCAGGCTCACGAGACGCCACCCTTCTGCTCTGGTATTGGAATGGCAAAAACAGCAGCATTGGAGAGAGCCCCGGCAcCGAGTTTGTCACTCCTAGAGCCATACTGACGGGACATGACTGTGAGATCACCTGTGCCACAGTTTGTGCAGAGTTGGGCTTGGTCATCAGTGGCTCCAAAGAGGGCCCTTGCCTGATTCATTCCATGAATGGAGACCTTTTGCGAACACTGGAGAGTCCAGCAGGCTGTGTGTGCCCTAAACTAATCCAGTCATCCACAGAAGGGCACTGCGTGGTATATTATGTCAAGGGCCACTTCTGCGTCTTCAGTGTGAACGGAAAGCTGCTGGGCCACATGGAAGTTGATGAAAATATCAAGGCCATGCTGCTGAGCCGCGATGGGCAGTACCTACTTTCAGGAGGGGATGGAGGAGTTCTAACAGTCTGGCAGGTCCATGACCTCAAACAGCTCTTCACCTACCCAGGCTGTGATGCTGCGATCAGGTCAATGGCCATGTCACATGACCAAAGGTGTATAATTACTGGCATGGCCTCCGGAAGCATAGTACTTTTTTACAATGATTTTAATCGATGGCATCATGAATATCAAACAAGATACTGA

Function

symbol description
lrba Predicted to enable protein kinase binding activity. Predicted to be involved in protein localization. Predicted to be active in cytosol and membrane. Is expressed in hindbrain and intestinal bulb. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human LRBA (LPS responsive beige-like anchor protein).

NR:

description
lipopolysaccharide-responsive and beige-like anchor protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015709 True 1380 mRNA 0.52 10 17416375 17447661

Neighbor

gene id symbol gene type direction distance location
AMCG00015710 lrba coding upstream 31050 17351282 ~ 17385325 (+)
AMCG00015707 lrba,LOC106602365 coding upstream 85781 17318293 ~ 17330594 (+)
AMCG00015708 NA coding upstream 115929 17281679 ~ 17300446 (+)
AMCG00015705 NA coding upstream 180591 17186838 ~ 17235784 (+)
AMCG00015706 NA coding upstream 262897 17153275 ~ 17153478 (+)
AMCG00015716 nr3c2,LOC107550687,LOC107742541,LOC107670737 coding downstream 442831 17890492 ~ 17919482 (+)
AMCG00015714 nr3c2,mra,mrb coding downstream 497828 17945489 ~ 17953069 (+)
AMCG00015715 prmt9 coding downstream 610221 18057882 ~ 18068675 (+)
AMCG00015726 slc10a7,LOC106591891 coding downstream 1004716 18452377 ~ 18458170 (+)
AMCG00015728 NA coding downstream 1230157 18677818 ~ 18682808 (+)
G99842 NA non-coding upstream 345321 17070583 ~ 17071054 (+)
G99840 NA non-coding upstream 348785 17067161 ~ 17067590 (+)
G99839 NA non-coding upstream 383646 17032429 ~ 17032729 (+)
G99836 NA non-coding upstream 403334 17012662 ~ 17013041 (+)
G99833 NA non-coding upstream 409898 17005412 ~ 17006477 (+)
G99867 NA non-coding downstream 2423 17450084 ~ 17465514 (+)
G99915 NA non-coding downstream 153042 17600703 ~ 17600908 (+)
G99933 NA non-coding downstream 389956 17837617 ~ 17837900 (+)
G99934 NA non-coding downstream 485338 17932999 ~ 17933328 (+)
G99932 NA non-coding downstream 506824 17954485 ~ 17956630 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 284600 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 917844 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 958533 16433443 ~ 16457842 (+)
G99624 NA other upstream 1284988 16131044 ~ 16131387 (+)
G99541 NA other upstream 1614741 15796950 ~ 15801634 (+)
G100007 NA other downstream 872395 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 1297226 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 2819746 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 5231176 22678837 ~ 22683895 (+)
G101061 NA other downstream 7417428 24865089 ~ 24865552 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_09396593_09479514 LRBA coding CI01000300 null 9396092 ~ 9480673 (-)