AMCG00015714 (nr3c2,mra,mrb)


Basic Information

Item Value
gene id AMCG00015714
gene name nr3c2,mra,mrb
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17945489 ~ 17953069 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015714
cCCAAAGAAGGCCTGAAAAACCAAGCAGCATTTGAGGAAATGAGAGTGAACTACATAAAAGAACTCCGTAGATCAGTAGGGAAGGCCACAAACAACTCTGGACAGACGTGGCAGAGGTTCTACCAGCTCACCAAACTACTGGATGCCACGCATGATctgGTGAGTAATCTCCTAGATTTCTGCTTCTACACCTTCCGCGAGTCCCAGGCCCTGAAAGTGGAATTTCCAGAAATGCTGGTGGAAATTATAAGTGACCAGATACCAAAGGTGGAATCGGGCATGACCCGGACACTCTACTTTCACAAAAAGTGA

Function

symbol description
nr3c2 Enables steroid hormone binding activity and steroid hormone receptor activity. Acts upstream of or within cellular response to cortisol stimulus and multicellular organismal response to stress. Predicted to be located in nucleus. Is expressed in several structures, including blood; eye; heart; liver; and pleuroperitoneal region. Used to study autism spectrum disorder. Human ortholog(s) of this gene implicated in autosomal dominant pseudohypoaldosteronism type 1 and pseudohypoaldosteronism. Orthologous to human NR3C2 (nuclear receptor subfamily 3 group C member 2).

NR:

description
PREDICTED: mineralocorticoid receptor

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015714 True 312 mRNA 0.47 2 17945489 17953069

Neighbor

gene id symbol gene type direction distance location
AMCG00015716 nr3c2,LOC107550687,LOC107742541,LOC107670737 coding upstream 26007 17890492 ~ 17919482 (+)
AMCG00015709 lrba,LOC107598261 coding upstream 497828 17416375 ~ 17447661 (+)
AMCG00015710 lrba coding upstream 560164 17351282 ~ 17385325 (+)
AMCG00015707 lrba,LOC106602365 coding upstream 614895 17318293 ~ 17330594 (+)
AMCG00015708 NA coding upstream 645043 17281679 ~ 17300446 (+)
AMCG00015715 prmt9 coding downstream 104813 18057882 ~ 18068675 (+)
AMCG00015726 slc10a7,LOC106591891 coding downstream 499308 18452377 ~ 18458170 (+)
AMCG00015728 NA coding downstream 724749 18677818 ~ 18682808 (+)
AMCG00015727 NA coding downstream 736669 18689738 ~ 18716514 (+)
AMCG00015731 NA coding downstream 853020 18806089 ~ 18828015 (+)
G99934 NA non-coding upstream 12161 17932999 ~ 17933328 (+)
G99933 NA non-coding upstream 107589 17837617 ~ 17837900 (+)
G99915 NA non-coding upstream 344581 17600703 ~ 17600908 (+)
G99867 NA non-coding upstream 479975 17450084 ~ 17465514 (+)
G99842 NA non-coding upstream 874435 17070583 ~ 17071054 (+)
G99932 NA non-coding downstream 1416 17954485 ~ 17956630 (+)
G100005 NA non-coding downstream 343970 18297039 ~ 18298304 (+)
G100046 NA non-coding downstream 675253 18628322 ~ 18630144 (+)
G100082 NA non-coding downstream 804993 18758062 ~ 18844449 (+)
G100143 NA non-coding downstream 1167759 19120828 ~ 19125504 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 813714 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 1446958 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 1487647 16433443 ~ 16457842 (+)
G99624 NA other upstream 1814102 16131044 ~ 16131387 (+)
G99541 NA other upstream 2143855 15796950 ~ 15801634 (+)
G100007 NA other downstream 366987 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 791818 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 2314338 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 4725768 22678837 ~ 22683895 (+)
G101061 NA other downstream 6912020 24865089 ~ 24865552 (+)

Expression


Co-expression Network