AMCG00015725 (smad1)


Basic Information

Item Value
gene id AMCG00015725
gene name smad1
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18744887 ~ 18771966 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015725
GTGCAGCCAGTATCCTATGAGGAGCCTAAACACTGGTGCTCTATTGTCTACTATGAGCTCAACAACCGTGTGGGAGAGGCCTTCCACGCCTCCTCCACCAGTGTGCTGGTGGACGGCTTCACTGATCCCTCCAACAACAGGAACCGCTTCTGCCTGGGGCTCCTGTCCAACGTCAACCGCAACTCCACCATTGAGAACACCAGGCGGCATATTGGGAAAGGCGTCCACCTGTACTACGTCGGGGGTGAAGTGTACGCTGAGTGCCTCAGCGACAGCAGCATTTTTGTGCAGAGTCGGAACTGCAACTACCACCACGGCTTCCACCCCTCCACGGTCTGCAAGATCCCCAGCGGCTGCAGCCTGAAGATCTTCAACAACCAGGAGTTTGCAGAGCTCCTTGCCCAGTCTGTCAACCACGGCTTTGAGGCGGTCTACGAGCTCACCAAGATGTGCACCATCCGCATGAGCTTCGTCAAGTTGCACAGGTAG
>TU125009
CAGTCTTCAACTGTCCAATTTTGATGTGCAGCCAGTATCCTATGAGGAGCCTAAACACTGGTGCTCTATTGTCTACTATGAGCTCAACAACCGTGTGGGAGAGGCCTTCCACGCCTCCTCCACCAGTGTGCTGGTGGACGGCTTCACTGATCCCTCCAACAACAGGAACCGCTTCTGCCTGGGGCTCCTGTCCAACGTCAACCGCAACTCCACCATTGAGAACACCAGGCGGCATATTGGGAAAGGCGTCCACCTGTACTACGTCGGGGGTGAAGTGTACGCTGAGTGCCTCAGCGACAGCAGCATTTTTGTGCAGAGTCGGAACTGCAACTACCACCACGGCTTCCACCCCTCCACGGTCTGCAAGATCCCCAGCGGCTGCAGCCTGAAGATCTTCAACAACCAGGAGTTTGCAGAGCTCCTTGCCCAGTCTGTCAACCACGGCTTTGAGGCGGTCTACGAGCTCACCAAGATGTGCACCATCCGCATGAGCTTCGTCAAGGATTTCCCCTCTGGACAGCTCTTGCCTAACAGTTGCACAGGTAGTTGGCAGAGTGCGTTAATCAAATTGGGTGATAAGGGAGAAATGCATGGGACTACAGGTGTAGCGCTGAACTGGAAGCAATCAATAAGGATTTCAATTAAATCGTCCCGTCTCACTATTTGATGGTTAACGTGTAGAATGTACAGTTGGAGTTAAAAGCATGCACACccttcatttcaaattaattcagttgAATTAGTgtaaattaaagtatattttcaaaCAATTCTGATTCTGGTGATATGTGTAATTGAAACTACTTATTAATCAGTAGTATCTCTCGAGAGTTTGATTCAGCAGACAGAGTTGATTGAATAGAGATTTCTATGCAGTTTCATATGAAGGGTGTAGAAACTGATATGATCCTTAATCTAATTAATACgaactaaaaacatatttaaattaatcaaaaattaTCTCTTCAATACAGTTATATTagtacaatataaaattactaaaatctttattataaccTAACTGAAAGACGACTGCAGGCAAAATCTTATTATAATGAGAACTTATTATATTCTGTCTGCACTATTTGAGGCCTAAATTAACTTGGAATTGAAGAAAACTGGTATacatatagtgagggaaaaaagtatttgattccctgctgattttttacgtttgcc

Function

symbol description
smad1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; I-SMAD binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in BMP signaling pathway and embryonic pattern specification. Acts upstream of or within dorsal/ventral pattern formation; myeloid cell development; and negative regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of heteromeric SMAD protein complex. Is expressed in several structures, including artery; fin; immature eye; mesoderm; and nervous system. Orthologous to human SMAD1 (SMAD family member 1).

NR:

description
PREDICTED: mothers against decapentaplegic homolog 1

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015725 False 489 mRNA 0.57 3 18770126 18771333
TU125009 True 1179 TUCP 0.43 4 18744887 18771966

Neighbor

gene id symbol gene type direction distance location
AMCG00015727 NA coding upstream 28373 18689738 ~ 18716514 (+)
AMCG00015728 NA coding upstream 62079 18677818 ~ 18682808 (+)
AMCG00015726 slc10a7,LOC106591891 coding upstream 286717 18452377 ~ 18458170 (+)
AMCG00015715 prmt9 coding upstream 676212 18057882 ~ 18068675 (+)
AMCG00015714 nr3c2,mra,mrb coding upstream 791818 17945489 ~ 17953069 (+)
AMCG00015731 NA coding downstream 34123 18806089 ~ 18828015 (+)
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding downstream 68680 18840646 ~ 18851278 (+)
AMCG00015736 frem3,LOC106610210,LOC106610213 coding downstream 286096 19058062 ~ 19063854 (+)
AMCG00015737 frem3,LOC107725184 coding downstream 328254 19100220 ~ 19108988 (+)
AMCG00015741 NA coding downstream 676940 19448906 ~ 19512925 (+)
G100046 NA non-coding upstream 114743 18628322 ~ 18630144 (+)
G100005 NA non-coding upstream 446583 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 788257 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 811559 17932999 ~ 17933328 (+)
G99933 NA non-coding upstream 906987 17837617 ~ 17837900 (+)
G100143 NA non-coding downstream 348862 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 361098 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 940921 19712887 ~ 19713244 (+)
G100241 NA non-coding downstream 954606 19726572 ~ 19782763 (+)
G100349 NA non-coding downstream 1552644 20324610 ~ 20327167 (+)
G100007 NA other upstream 418983 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1613112 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 2246356 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 2287045 16433443 ~ 16457842 (+)
G99624 NA other upstream 2613500 16131044 ~ 16131387 (+)
G100338 herc3 other downstream 1495441 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 3906871 22678837 ~ 22683895 (+)
G101061 NA other downstream 6093123 24865089 ~ 24865552 (+)
G101248 NA other downstream 7491949 26263915 ~ 26264308 (+)
G101275 NA other downstream 7601187 26373153 ~ 26377699 (+)

Expression


Co-expression Network