AMCG00015726 (slc10a7,LOC106591891)


Basic Information

Item Value
gene id AMCG00015726
gene name slc10a7,LOC106591891
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18452377 ~ 18458170 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015726
ATGGGTCTTTTTGACAGGATACGAAAGGAATGGTTCATTATAGGGATAGTGCTTGTGATCATCTTCGCGAAGCTGGAGCCTTCTATTGGAGTGAAGGGAGGTCCATTGAAGCCAGAGATCACAATTACATATGTTGCTGTGTCTGCCATATTCTTTAACAGTGGATTATCCTTGAAAACTGAGGAGCTAACAAGTGCTTTGATGCATGTGAAGCTTCACCTGTTTGTGCAGACCTTCACGCTTGTGTTTTTTCCTGCTGCAATGTGGCTGTTCCTGCAGCTCCTGAAAATTACCACTATCAATACGTGGTTGCTACAAGgGTTACAGACGGTTGGCTGCATGCCTCCACCTGTATCTTCAGCTGTCATTCTGACCAAAGCAGTGGGTGGAAATGAG

Function

symbol description
slc10a7 Predicted to enable symporter activity. Acts upstream of or within bone mineralization and cartilage development. Predicted to be located in Golgi membrane and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SLC10A7 (solute carrier family 10 member 7).

NR:

description
PREDICTED: sodium/bile acid cotransporter 7

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
K14347 SLC10A7, P7; solute carrier family 10 (sodium/bile acid cotransporter), member 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015726 True 396 mRNA 0.45 4 18452377 18458170

Neighbor

gene id symbol gene type direction distance location
AMCG00015715 prmt9 coding upstream 383702 18057882 ~ 18068675 (+)
AMCG00015714 nr3c2,mra,mrb coding upstream 499308 17945489 ~ 17953069 (+)
AMCG00015716 nr3c2,LOC107550687,LOC107742541,LOC107670737 coding upstream 532895 17890492 ~ 17919482 (+)
AMCG00015709 lrba,LOC107598261 coding upstream 1004716 17416375 ~ 17447661 (+)
AMCG00015710 lrba coding upstream 1067052 17351282 ~ 17385325 (+)
AMCG00015728 NA coding downstream 219648 18677818 ~ 18682808 (+)
AMCG00015727 NA coding downstream 231568 18689738 ~ 18716514 (+)
AMCG00015731 NA coding downstream 347919 18806089 ~ 18828015 (+)
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding downstream 382476 18840646 ~ 18851278 (+)
AMCG00015736 frem3,LOC106610210,LOC106610213 coding downstream 599892 19058062 ~ 19063854 (+)
G100005 NA non-coding upstream 154073 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 495747 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 519049 17932999 ~ 17933328 (+)
G99933 NA non-coding upstream 614477 17837617 ~ 17837900 (+)
G99915 NA non-coding upstream 851469 17600703 ~ 17600908 (+)
G100046 NA non-coding downstream 170152 18628322 ~ 18630144 (+)
G100082 NA non-coding downstream 299892 18758062 ~ 18844449 (+)
G100143 NA non-coding downstream 662658 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 674894 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 1254717 19712887 ~ 19713244 (+)
G100007 NA other upstream 126473 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1320602 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 1953846 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 1994535 16433443 ~ 16457842 (+)
G99624 NA other upstream 2320990 16131044 ~ 16131387 (+)
AMCG00015725 smad1 other downstream 286717 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 1809237 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 4220667 22678837 ~ 22683895 (+)
G101061 NA other downstream 6406919 24865089 ~ 24865552 (+)
G101248 NA other downstream 7805745 26263915 ~ 26264308 (+)

Expression


Co-expression Network