AMCG00015727


Basic Information

Item Value
gene id AMCG00015727
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18689738 ~ 18716514 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015727
ATGAGGGTAGTTGCAAATCAGAAGGAAGTGCTCAAGCCCCAGTTCTCTGTGAAGGAGGAGCCCCAGGCAGCGGAGCCTCTGAGCCCCAGGCTACCACAGAGCCAGCCCAACTACGTTTTCTGTCAGGAGGGGCCCACAGGGACGCCCGAGCGGCCCATGAAGAGCAGCGAGGGCAGCCCTCTAGCCAAGAGCGGCCTGCTGAGCCAAGACATCAATGTGAAGGTGGCGTCAGAGCTGCTGATGAAGCTCTCAGAGAACAACAAGGAAGCAAGCATCCAGAAGGCCACGGTGAAGGCAGAGCCGATGGAGGTGGACAGCCCCGATGATCTCCCTTCCTCAGCTCACCTGCTTGGTTTCGGCAATTTACCAGCACGGGAAAAGACCGAGCCACTGCCCAGCATCTCGGAGGCCTTGGCCTGCCCTCAGAAGCCGCTCTTCTCCCAGGACATATCGGTTAAAATGGCCTCCGAGCTGCTCTACAAACTGTCAGaaAAAGTTAGCAAAGCTAATGACCACAAAGATAATTGTGTCCTAAATATGAACAGCCCATTCCTTGAAGACCGCTTCAGACAATCACCCTTTAACTCCTGCTCTAAGGATGCTGTCCCCAGCGAACCCGGCTCATCGGCAAGAGCCGCAATGCAAGACTCGGAGAAGGCCGGCCTGGAGCCTGGGAACGGAATGCCCCAGTGGAGGCTGAACGAGCAGCTCTTTCCCTGCAGCGTGTGCGGCAAGGTTTTTGGGAGGCAGCAGACACTCTCTCGGCATCTCTCTCTGCACACTGAGGAGAGAAAGTACAAGTGTCACCTGTGTCCTTACGCAGCCAAGTGCCGTGCAAATCTCAACCAGCACCTCACCATCCACTCCGTCAAACTGGTCAGCACGAACGCCGAGCAGATCGTCAGCGCCGTTTCTGCAGAAAGCAGCGACCGCAAGAACTGCCCTTACTACTACAGCTGCCATGTGTGTGGGTTTGAGACGGAGCTCAATGCCCAGTTTGTCAGTCACATGTCTCTTCACGTAGATAAGGAGCAGTGGATGTTCTCTATCTGCTGCAGCACTTGTGAGTTTGTGTGCAGCGAGGAGACCGAGATGAAGACGCATGTAAATACAGGCCACGCAGGCCTCAACTCTAAAAGTCCCCTCAGCGAGACTAAGAGCACGTCCTCCTCGCTGTCCGTCCTCAGTGACTCCATCAACGGCTCGGAGAGCAGTGAGATCGCCCATGGCAACGAGGAGCTGAAGAGCCTGCTAGCTCCGCCCTCATCGGCAGGCAGCCAATCAAGCTCAGGCAGCCACTCGGGATCCggaacagaagaaaagtctGAAAAAGGTTTTGAGTGCGTGTTCTGCAACTTCGTCTGCAAGACAAAAATGATGTACGAGCGCCACCTGCAGATCCACTTGATCACGCGGATGTTCGAGTGCGATGTGTGCCACAAGTTCATGAAGACCCCCGAGCAGCTGCTGGAGCACAAGAAATGCCACACCGTCCCCACTGGAGGGCTCAAGTGCCCCTTCTGCATCTACTCCACCAACCGGCCCACGGCGATGGAGTGCCACCTGAAGACGCACTACAAGATGGAGTACAAGTGCCGCATCTGCCAGAAGGTCAAGTCCAACCAGCTGGAGCTGGAGATGCACATCCGTGAGCACCGGCTGGGCAACCACTACAAGTGCGAGCAGTGCGGCTACCTGTCCAAGACGGCCAACAAGCTGATCGAGCACGTGCGTGTGCACACGGGCGAGCGGCCCTTCCACTGCGACCAGTGCAGCTACAGCTGCAAGCGCAAGGACAACCTCAACCTGCACAAGAAGCTGAAGCACGCGCCCCGGCAGACCTTCAGCTGCGCCGAGTGCTCCTTCACCACCACGCACCCCTTCGTTTTCAGCCGCCACGTCAAGAAGCACCAAAACGGCGAGTGCCCTGACGAGGACCCGCACCCCCAGTCGCGGAGGGGGAAGGAGGCCTTCCTCGTAGGCAgtggcggcagcagcagcagcagcgggaGCAGCAGCCCCCTGCTCACCCTGTCCGCCTCCCAGGCGCTGCAGTCCGTGGCTCTGTCCTTCACCGGGAAGCAGAAGGACGCCAAACCGGTTCTCCACTACCTTGCGGCGAACGGCATGTCTCTCTCCTCGCATTACGAGAAGTACAGGAACTGCGACCTGGCCCACCTCATCCCCCTCCCCACCCTGTTCCCCCCAAGCCAGTACGTGGGAGACGGCACATTCcacccttcctcctcctcctcctcctcctccagactGCGCCCCGCTGCCTCCTGTCCCtcgccctccctctctccagacTCTCTCAAACACTCCTTCCTCGCCTACCTGGGACTCACCGAGAAGGCGAAGACCGTGTGAAGCTGCCTCACACCCTCCCTGGACAGTCGCGAGGCAAGCTGTGCCCGCTGCAATAGGACCTCTCCCACCGAGTTATCATAACGTGCTGGATATAAACGTAGTCGaggtagaaaaaataaaaattaaggcTGTTTGTGCTTAATGCATTTATATCAAAGCTGCTTTATATTCAGTTATAATACTTTTAGTTTActtacctttctttttttacaaacaGGAACCCACTGCAttacctgaaaaaaataaatgggacaAAAAGAAGTTTGAtatgaacaagaaaaacaaaggagGAAAGGGGCGGAGTTTGATAGTGTTGCATACATTCGAGTAGGGATTGTCTTTCTCAAAGCATTAGAAAGCATGCTTTTCTAAGTGTTCGGACTTGTCTAGGTGTTAATATGGGCTTAAAATGAGATGGAAAACTATAACAAGGTGGTTCCTTGATgctctgaagaaaaaaaaaaaaacgaaaaaaaactCCACAGCCAGTTACGCTGAACTGTTATAAACTGTTTCCAAAGCACCTCAAGCCCTTATCAGTCATATTGTTTTGTAGTGTCTCCCTCTGGCTTTGCTTAAAGGTGGCATTGCATGAAGTCTTAAACTATCTTGCCCCCATTTGGACTATTTCCCGACACTTGTGAACATctaatatacatattgtatgtCAACTCATTTGACTTATGAAGCACTACTCCCTCTGAAGTGTGTCTTCGTTTTTTTTAAGACCTTGACCGAGTTAGAATGCTccttttgaattgcaaaattATACCCTAGACCCAACCACACGCGCCAAACAAAACGAGTGCCTGTGTGCTACAGCAGTAAAAAAAAGAGGTGAGATTTTCACTCGGGCAATTGCAATCATGTGCCAGTCTTTTCCAATGCGCTCTGTCCTCCCGGTATCTGGATGTAAGGTTTCTCGGAGGACAGTGTACGATACACTCGTTACAGAGGTAACACAACGGGCGATAGGTTTGCTTAACATGGCCTTGTCCTCCTGGAATCCAGCTTCTTGGTGTCCATTttggagttgtttttttaattctttttaataattgttcCAAAATGACTttgttgaatgtatttgttttttaaatgcagaggcGGGGGTAGGTGTGCCGTTTTGAGTCTGGTTAAGATTTGATCAAAATCATAGCATTTTGGTGgccttctgtgtttgtgtgaactatgattttatttattagcattttaataaCTTTAGATATCCTATCATGACGTCGGATTCAAAACGCAGCCTGAAACTGGCCCATGGGTGCAGCGGTAAAATGTCCATTCCTTTATATgtagatatgtatgtatatgtgtgtgtgtgtgtatatatatttgcagtAGCCTccagatatatacatacatgtatatacataatacatatcattaaatcttgtttttaagGATGTTTGCAATGCAGATTTCTGTATCCTCTTGGGTATTTTGACTTTTAACTTTCATTAAGACAATTGCACTTAATATCATCAagtctaaaataaaatgcacttaaTATTCCCTTTACatattgtataaaaatacaagaaCCTGGGTTTGCTGTTCTGTACAGTACATTTGATTTTACCTAAAAGGTAGTCTTATAAAGcatcacacacaatcacatgtatgtctttttttgtattgaaaaaactaaacgtTACTTTGTACACGTACCTTTCCGGTAGTGCAGTGGTTCCTATGTGTCTAACCCTCTATGGAATGAAGAAATACCATGTACATAAAGTCCTCTGTTGTTTGATTATGCGATAAATAGATGGTAGAGGTTGGAACCTGGGCAAAAATGCTCAGGCTAAATGAAAACAGGCAGTTTTGCACAGTGCTTTAGTCTTGCactattttatatttgtcattAAGAATACAAATTCCTACAAATTTAAGGAAGGCATACATGGCGTTATCTACGTATGCTTACGGAAAAAGGCAAAATCACttctttaatttacatttgtagaTGGGAAGGAGGGCCTACATTTGGCACTTGCATTTCCTAagtggtctttttttttctttcttatttgtAAAGGGATTTTGAATTCACACCAGTTTTATTTCACACGTGTCTAtgtttgattttagatttttaaattctctctgaaatgaaaaaaaaaaaaaactttttaaaggCAGGTTTTAAAGACCAATAAAATCCACACAGGAAACGGACTGCGCCATTAGGAGTGCGTTTGTGCGTTTCTGAATATGAGGGTATCAGTCTTCAGTTGCACCCCCTGGAGGGTTTGCTATGTACAAGTACAGCATTCAGTCCTGGTGCTACATTATTTCAATAGGGGGTGCTCCCGCAAAGCTAAGTGAAGAACTCCCTATAAATTTGCATTATCTTTTATACTCTAGTGCCACTTGGTGGAAGGGAACAGCCTGAAATACCTGAGAATGAGTCAAACTGATTTTCAGTGTCAACGCTGAGACGCGTGTCAGCTGACTGACaccattttttgttgtttttttgtctgccTTTGAATATATCATGTTATCTAAAACGACTGCACTTTCGTACAGTGTTCAATGGGAAAACCTGACAGGAAATTGGTCTGTCCTTTCGATACCAGTATTTCTAAGCACTTGATTCAGCTATTATTTGCCTAAATGTAAGCAGCACAGTGATTTAAAGTTATTGCGTGACTACCTTTAGCACTTCGGAAGATGCATGAAATTGCAAACTCTAGTTCTTAGCACTTTTTTTTCGCTCCTTAAgactgactttttatttttggtttgcatTTAGTCATGCAGTTATTTCTCTGCACTCTCTTCAGTCCATGTATAGctttatttttgctgtattttgttaCTCAAAGCtcaatttgttttgcttggttttccttttgttttttaggtttttattttggcacacagtaaaaatgttatgtactgtataaagcttttttttattacttcatCTTTAAGGCTGTACAGGGTTGTTTGTGACAGTAACTGGTAATTAGatctttttgtacttttttggttttgttttgttgttttctgcattatttttatgttcagaTTGCCAGTTCTCAATGTAACAGGATTTGGAAGTAAAGCTTACTCCAGCTATTACA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015727 True 5480 mRNA 0.46 11 18689738 18716514

Neighbor

gene id symbol gene type direction distance location
AMCG00015728 NA coding upstream 6930 18677818 ~ 18682808 (+)
AMCG00015726 slc10a7,LOC106591891 coding upstream 231568 18452377 ~ 18458170 (+)
AMCG00015715 prmt9 coding upstream 621063 18057882 ~ 18068675 (+)
AMCG00015714 nr3c2,mra,mrb coding upstream 736669 17945489 ~ 17953069 (+)
AMCG00015716 nr3c2,LOC107550687,LOC107742541,LOC107670737 coding upstream 770256 17890492 ~ 17919482 (+)
AMCG00015731 NA coding downstream 89575 18806089 ~ 18828015 (+)
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding downstream 124132 18840646 ~ 18851278 (+)
AMCG00015736 frem3,LOC106610210,LOC106610213 coding downstream 341548 19058062 ~ 19063854 (+)
AMCG00015737 frem3,LOC107725184 coding downstream 383706 19100220 ~ 19108988 (+)
AMCG00015741 NA coding downstream 732392 19448906 ~ 19512925 (+)
G100046 NA non-coding upstream 59594 18628322 ~ 18630144 (+)
G100005 NA non-coding upstream 391434 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 733108 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 756410 17932999 ~ 17933328 (+)
G99933 NA non-coding upstream 851838 17837617 ~ 17837900 (+)
G100082 NA non-coding downstream 41548 18758062 ~ 18844449 (+)
G100143 NA non-coding downstream 404314 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 416550 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 996373 19712887 ~ 19713244 (+)
G100241 NA non-coding downstream 1010058 19726572 ~ 19782763 (+)
G100007 NA other upstream 363834 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1557963 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 2191207 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 2231896 16433443 ~ 16457842 (+)
G99624 NA other upstream 2558351 16131044 ~ 16131387 (+)
AMCG00015725 smad1 other downstream 28373 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 1550893 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 3962323 22678837 ~ 22683895 (+)
G101061 NA other downstream 6148575 24865089 ~ 24865552 (+)
G101248 NA other downstream 7547401 26263915 ~ 26264308 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_04380746_04381576 NA coding CI01000049 null 4378852 ~ 4382808 (-)