AMCG00015728


Basic Information

Item Value
gene id AMCG00015728
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18677818 ~ 18682808 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015728
CCCGCAGATGTAGACAGAGTAGAAGAAGAGGAGGCAGAAGAGGAGAATGTGGAAGAAGATGGCTGGTTTGGGAATGCTTCGGACACTCCCTCTGAGTCATCCTTTGGGGACGTGCAGGACGAGCTCAGGATCTCTCCTGATGAGCACCAGCAGGAACAGGACACATCTGCGGAAAGCTCCATAGGCTGCCCCACTCCAGTCCATGGGAACTCGCTGGAGCTCCTGGGGTTGGACAGTGAGCCCTTTAAGCCTGGGAGCTTCTCTGCCAAGGACCCACTGTCCTCCGTGGTGTCCTCGTTGTATGCGGACGCATCTCAGGCTCTGGGGAAGCCACTGAGTAGCAATCTGAGGCGCCTCCTAGAAGCAGGCTCTCTCAAGTTGGACGCAGGTGACCTGGCCGCCAGAGGACGAGGAGGGGATTCGCCTCCTGTCAACTTGGCCTCCACCTTGACCCTCTCGCCCTCTTCCCATCATGCTCAGCAGTTAAGTGCCCTTGCCCGGAAACTGGCCAACACCACCTCCAGCGCTGCCTCCCCAGCCTCCACAGCACCCGCGAACCCCATCAAACAGGAGCCATGCGACCCTTTCGCCCCCAGcatgagcagcagcagcagcgctgGGGGCAGCACCTGCGGAGGCAGCTTCGTGTGGGTGGGCGGCCCAGAGAAATGGCCCCCCGCTAGCTGTTCAGCGCCCaacagcggcagcagcagcctcTCCCCGGACTCTGCCATCCAGAAGCTGAAAGCGGCAGCGAACGCGGTGCTTCAGGACAAGAGCGCGGTTGCATCATCaacgtcctcctcctcctcctcctcttcctcttcctcctcttcctcctcgtcctcctcctccgctGCAGCTGTAGGGGGGAGGCCTGAGGAGGCGGTGCGCTTCGATGCCTTCGCCTCCCCATTCAGCCCGCAGTCAGCCAGCTCCACGCTAGCCGCCCTGTCCAAAAAGGTCAGTGAGAGGGGGCTGTGCGGTGGGGGCCAGGTGGACCACCAGCCCCCAGCCAGCTCCTTCCTCTCGCTGGTCTCCATGACCTCCTCGGCAGCGCTGCTCAAGGAGGTGGCGGCCCGGGCAGCGGGGAACCTCCTGGCGGACAAGAAGGAGCCGCCGCTGGTTCCAGGACCCCCAGAGGATGTCAAGCCCCTCCTGGACAAGAACCAGAAAATCCACACACCCTCTCAGACGCTGGAGCTGCTACTGCCATCACCTACAAAGGGAAGAACTAAAGCCAGCAGTCAAGGAGCTTCTCCTGAGGACGGGGGAAAACCCTTTCAGTGCCCTGTGTGTGGCCTGGTCATTAAGAGGAAGAGCTACTGGAAGCGACACATGGTGATTCACACCGGCCTCAAGAGTCACCAGTGCCCTCTCTGCCCTTTCCGCTGTGCTCGCAAAGACAATCTCAAATCACATATGAAGGTCCACCAGCATCAGGACCGAGGGGAGACCTTCCAGTGCGAGCTCTGCCCCTTCACCTCCTCCCGCCACTTCAGCCTCAAGCTGCACATGCGCTGTCACCAGCACTTCCCTCGCACCGAGGTCAAGGTCAAGGAGGAGGTCACGACAGACACCGAGGGCGAGGGCTCAGTGCTGGGCGACTCGGCTGGTCCGGGGGAACTCAAGGGGGCCAGCCGGAGCTCCCCGATGCCCCAGGATGCCAGGTTGGGAGCCTCGCCCGCAGACTCCACCAATCACATCCACATCAAGGAGGAACCCCAGGAGAGGGATGTGTCTTTGCTGCTGCCATTCCCCCTCTGCAGGGAGACCCCAATCAACAGTAGCGCTAAGCCTCTGGAGCCCGGAGGAGTGAAGCCCAGCCACCCCACCGCCGCTTCCCTCTTCAGCCCTGACATCACCACTAAGACAGCCACCGACTTCCTCATTAAGCTCTCAGGTGAGGGTGAGCGTTCACCACCGTGGCTTGCGGATGTGCCTTCACTCCGGAGGAGGACCTTGGAGTTGGCGCACATTCAAGGAGCAGAGGCTGCTGGTCTGGCAGCCTTTTCAGTACTGTATCTCTCCATTGCGACGATGATCTCAGCCAAGCCGCAGGACTTCTCCTGCCCTAACAGACAGTGTAGACTCATGGAGGTGCTTTTATGTAACGCATTTGTGGCCAAGGCCCAGGTCATCAGATTGATCAACTCCAGTAGCCTCCTGTCACTGTACACTGCACAGCTGGTGGAGAGAGTACTTGGGGACGGTGACACCATTCAGGTCAAGAGGGAACCTAGTGCTGCAGTGGACTAA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015728 True 2259 mRNA 0.61 4 18677818 18682808

Neighbor

gene id symbol gene type direction distance location
AMCG00015726 slc10a7,LOC106591891 coding upstream 219648 18452377 ~ 18458170 (+)
AMCG00015715 prmt9 coding upstream 609143 18057882 ~ 18068675 (+)
AMCG00015714 nr3c2,mra,mrb coding upstream 724749 17945489 ~ 17953069 (+)
AMCG00015716 nr3c2,LOC107550687,LOC107742541,LOC107670737 coding upstream 758336 17890492 ~ 17919482 (+)
AMCG00015709 lrba,LOC107598261 coding upstream 1230157 17416375 ~ 17447661 (+)
AMCG00015727 NA coding downstream 6930 18689738 ~ 18716514 (+)
AMCG00015731 NA coding downstream 123281 18806089 ~ 18828015 (+)
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding downstream 157838 18840646 ~ 18851278 (+)
AMCG00015736 frem3,LOC106610210,LOC106610213 coding downstream 375254 19058062 ~ 19063854 (+)
AMCG00015737 frem3,LOC107725184 coding downstream 417412 19100220 ~ 19108988 (+)
G100046 NA non-coding upstream 47674 18628322 ~ 18630144 (+)
G100005 NA non-coding upstream 379514 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 721188 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 744490 17932999 ~ 17933328 (+)
G99933 NA non-coding upstream 839918 17837617 ~ 17837900 (+)
G100082 NA non-coding downstream 75254 18758062 ~ 18844449 (+)
G100143 NA non-coding downstream 438020 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 450256 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 1030079 19712887 ~ 19713244 (+)
G100241 NA non-coding downstream 1043764 19726572 ~ 19782763 (+)
G100007 NA other upstream 351914 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1546043 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 2179287 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 2219976 16433443 ~ 16457842 (+)
G99624 NA other upstream 2546431 16131044 ~ 16131387 (+)
AMCG00015725 smad1 other downstream 62079 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 1584599 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 3996029 22678837 ~ 22683895 (+)
G101061 NA other downstream 6182281 24865089 ~ 24865552 (+)
G101248 NA other downstream 7581107 26263915 ~ 26264308 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000049_04386375_04434840 ZNF827 coding CI01000049 null 4386375 ~ 4434840 (-)