AMCG00015731


Basic Information

Item Value
gene id AMCG00015731
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18806089 ~ 18828015 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015731
CGGCAATCGCACCCGCAAATAAACTGTCAAATCCCGCACAAACCTACCAAACAAGGCAAATCATGAGGGAAAGTGAGAGCCGGGCTCAGACGCCGGGGCTGCGGGATATCAATATTATATAGTAGAAGTTATTGCGCAGATTGGAACAGGTTTACCATTAAGGTGCGGGGAAGTACCGCGATGCAGACGCGCGCAGAAGTCTGTGCGCCCGCGTTTGTGTTTGAAAAGCGAAACAAACTCGTTTTAAGGGCATGAAGATTTCCTGGATTGCCCGTCGCACCGTGTAAACCGCCGTGTGAGCTGCTGccaggggggagaaaaaacaccAGGGCGACCAAAATGGCAGGGAGGACACCACAACAAGACGAGCAGCGCAGCAGCAGCAACGCCGAAAAGTTCATGGATGAATACCTGCAGGCTCTGGGGCTGTGCCGAAAGAAGATCGCCAAAGACGGGTCCTGCTTGTTCCGAGCGGTGGCCGAGCAGGTTTTACTGAGTCAGAGCCGACATCTGGAAGTGAGGCGTACCTGCGTCGATTATTTGGCAGAGAACAGACAGAAATATGAAGCGTTCATTGAAGGGAGTTTTGAAGAGTATTTGCAAAGGCTGGAGAATCCACAGAACTGGGTTGGAGAGGTTGAAATAAGTGCTCTGGCTCTCATATACAAGCATGATTTTGTTATCTTTCAGGAACCTGGAAAACCACCAGTTAATATAACTGAAAACAATTTTCCTGACAAGGTGCAGCTGTGCTTCTTAAATGGGAATCATTATGACAGTATCTACCCAAAAGAATTTGTGCAAGATGCAGCCCTTTGCCAGTcCATTCTGTACGAGCTGCTTTACGAGAAGGTCTTTGGGGTGGATCACGAGACATTGGCCTCCAGTCTGCAGAGCTCTAATGGGACGGACGAGGATTTCACTGAGAGGGAGGACAGTGATGAGTCGGATTTAGATGGAGAGGAGGCCTACTGGGCTGACGGAGAAGATGATATCACTGAGATGAACAAATTCAGGTCATTTCAAGGTGATAAAGTTCACAAGCCACATCATTCTGGTTTCCACTTGCCCCAGAGAGTCCTGAAGTCACTCAACCCCTCCTTCTTCAGAAATGTTGAGTATGATGTCTGGCAGAGGTCTAAAAAAGCCCAGCAAAATATGGATTACTGCATTGCTGCAGGAATGCAATTCCACATTGGAGACAAATGCAAGGTGTCCCTGGATCACAGTGGTAAATTCTATAACGCATATATTCAAGAGGTTTTGCCCAACAATGGCCCTGTGGTGGTGTTCGTGGAAGAACTTGCAGAAAAGCGCTCCATTTCACTGAGGAACATCAGGCCTTCCTCAGAGGAGCCCCTGCCCTGGAGCACCGTGGCAGAGAAGGGAAAGAGGGCCAGCACGGTCAACGGACACGGGACGGACCGAGACAGTCGAGGAACAAGGAAGTTGACAAAAGCAACTGCAAAATCTCCACTGGCACCTTCCACCTATATTCAACCAGCTGGTCAAAGCAGAGCTCAGCAGCAGCTGCCACCCTGGCCCCTAGTCCAGTCCCAGCAATCCCCTCCAGAAGACAGAGCAGGAGGCAAAGCCTTCTCCACCAGGAAGTGTGATCTGGGACTTCCCTGTCCTAAAGGCCTGACAGATGAGCGCATGGCTAAAGAGGCAGAACAGGAGTCTCAGGCTCAGTTTGACATTTTGCAAAAGGACGAGGAAAACTTCCCAGCCCTCAGCAGCCAGAAGGTTTGCCCGGCTGCCACTCAGACCAGTGCGGGCCAGAAGAATGTGAACCCTCAAACCAGTGACAGAAAGGGCTCCAGACGACGGATGGAGGCACAGGAGCAGCCCAGGGAGAGCGAATCAAAAACGCCATCTCATGCATGTGTCAGGAAAGTTGAGAAGAATAAACCTTTGGCTAAAAACACTGGGGAATCGTGCCAGAAGAAGATGCTTTCACCTCCTCCCCCTGAGCAGAAGCCAAGTGTACAAAACCCAGTCTCTCCCCAGCAGGGTCTAGTCCAGCCCTTGTACTCCCCAGGACTACCTAGCTCAGACCCCACACCTACCCCATCTCCTCCTGCTTCTGCTGGCCCTCAGACTGCCACCCCACCCAGTAGCCTCACCCCACCGGCCCTGCCAGCTGATCCACCACCATACGAGACTGCCACCAGCTGCCCTGCAGTGCCTCCCCCACCTGCCATGGCAGAGCTCATCTCACCGGCTCGGGTGAATGTCTCCCCCATGCCCCCACCTCCCGTCCATCTGCCTCCTGTCAGCCAGCCATCGATGCCCTTTCCCCAGATGCAGTTCCCCTACCAGGACCCTCTGTATCCTGGGTTCCCTTTGAATGAGAAGGACGAGATCGTTGCAGCACCATCATACTCCTATTGTAGAAATGGGGACGATCTTCCCAGAGatAAATGCATCCTGCGATTCTTTTTTAATCTGGGTTTAAAggcgTATACCTGTCCCATGTGGCCACCCCATTCCTACATCCTCCCCCTGCACCAGGCTTATCTGAATGTCTGTGCAATGCAGCCCAAGGTGCCGGATCCTGCCTCTTACACCCCGCCATGGTTCCCAGAGACTCCTGCTGCCGCCCATCGTGTGAACTCTGCCCCCCCAGCCAACACCATGCCGATGCAGGAGAACCCTGGCTATAACCTCCCTGGTCCAGCTGGTGTGAGAGCTCTGGGGAGGCTGCCATGGCCAGGGCAAGGGCACAGTCAGTACATGGGGGGCTACACGGCTCCCACTCCACTCTTTTCCCCTATCCCTTTGAGATGCCAAGTCCCGCAGTTTCCTAGTGGAAACTCTGCCATAGCTGAACCCCCGCAGATCAACCCTGCCAATTCCCAGGAGGGTAAAACCGGGAGTCTGGGCTTCAGTGAAAGGGTTTCCAGTGTGCCCACCACAGCGGCTAACATGGAACCGTATACCGATCCAAATATGATTATGACCCTGAAATCCTCTGCCGCAGAGGTTGATATCACAGAAAAGGCTGCCGAGGATGAGACATTCGGAGATGGTACTGTAGgggctggagctggggctgagATGGCAACACCTCCACAGCTTCTGGCTGAAGAGGTATCTGCCGCAGGGTTGAAACAGAGTGCACAAAGGCCACTTTGCAAGGAAGGCAACAGTTTAAGTTTAGATAATCGCCATGAGGCAAGTGCGATCAGGGTTAGCAATGTCCATGAGGCAGTGGGTATCGACAGGGAACTCGAGAATCCCAGAGAGACTGAGGAGGCGAGTCAATGGTCTGAGCAGGGCACTGAGAAGTCCTCTGGCGTCGCACATCTGCCCGGAGAGGATGTGGGGGAATACGAGATCAGCGATACCATGCCGAGGAGGGGCAGGTCCTACTATGGCCGCTCCTACAGGGGGAAGAGAGGCTTTGACGACGGGCAGGGCTTTCGGGAGACTAGATCAAGGGGTCAGGGAAGGGGGTCTCGCAGGTGGAGAGAGTCAGATGATGGGCGAGAATACAACTACAGGGAGGGGAAGTATGGAGAGAGGAAGTATAGAGAGAAGTGGGATCACCAGACTAGTGTACATGGAGAGAAGAGTAGCCATTTTAGAGGCTCCTCTGCAGAACCTTGA

Function

GO: NA

KEGG:

id description
K13718 OTUD4; OTU domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015731 True 3612 mRNA 0.53 23 18806089 18828015

Neighbor

gene id symbol gene type direction distance location
AMCG00015727 NA coding upstream 89575 18689738 ~ 18716514 (+)
AMCG00015728 NA coding upstream 123281 18677818 ~ 18682808 (+)
AMCG00015726 slc10a7,LOC106591891 coding upstream 347919 18452377 ~ 18458170 (+)
AMCG00015715 prmt9 coding upstream 737414 18057882 ~ 18068675 (+)
AMCG00015714 nr3c2,mra,mrb coding upstream 853020 17945489 ~ 17953069 (+)
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding downstream 12631 18840646 ~ 18851278 (+)
AMCG00015736 frem3,LOC106610210,LOC106610213 coding downstream 230047 19058062 ~ 19063854 (+)
AMCG00015737 frem3,LOC107725184 coding downstream 272205 19100220 ~ 19108988 (+)
AMCG00015741 NA coding downstream 620891 19448906 ~ 19512925 (+)
AMCG00015742 NA coding downstream 812031 19640046 ~ 19671896 (+)
G100046 NA non-coding upstream 175945 18628322 ~ 18630144 (+)
G100005 NA non-coding upstream 507785 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 849459 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 872761 17932999 ~ 17933328 (+)
G99933 NA non-coding upstream 968189 17837617 ~ 17837900 (+)
G100143 NA non-coding downstream 292813 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 305049 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 884872 19712887 ~ 19713244 (+)
G100241 NA non-coding downstream 898557 19726572 ~ 19782763 (+)
G100349 NA non-coding downstream 1496595 20324610 ~ 20327167 (+)
AMCG00015725 smad1 other upstream 34123 18744887 ~ 18771966 (+)
G100007 NA other upstream 480185 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1674314 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 2307558 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 2348247 16433443 ~ 16457842 (+)
G100338 herc3 other downstream 1439392 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 3850822 22678837 ~ 22683895 (+)
G101061 NA other downstream 6037074 24865089 ~ 24865552 (+)
G101248 NA other downstream 7435900 26263915 ~ 26264308 (+)
G101275 NA other downstream 7545138 26373153 ~ 26377699 (+)

Expression


Co-expression Network