AMCG00015736 (frem3,LOC106610210,LOC106610213)


Basic Information

Item Value
gene id AMCG00015736
gene name frem3,LOC106610210,LOC106610213
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19058062 ~ 19063854 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015736
ATGGCTGGTTGTCTTCTTCACAGGACTGGACTTTCTAAGGCAGCTGCAGTTTCGAGGTGCCTCCTTGCCCTCCTTGCATTCAGCTCCAGCTTGTCAGCCGACGGGGCAGAGAATTTTGAGCCTGCTTTCCTCTTCGGGCCCAGGCCAGGACCTGATTCTGACTCTATACTAGTTGCCAACAATGGGGTGAGGGTGCCTTTTGGCAGATCTGTTTATTTAGACCCAATCAATGACCTGGTGACTGAAGTGCAACCTGGAGACCGGTGCTACATCACAGTGCTAGAGAATGACCCTCTGGCTCAGAGACCGGGCATGCTGTCTCCGAAGAGATTCCCCTGCACTTTCGGGGCAGAGGAGGTGAAATACACCCACTTCGGATCGAGAAGCCCCAACAAGGACAGAGTGAGGCTGCAGCTGAGGTACGACTCCCAGACGGACACAATCATCATTCCTTTGCTGCTGGAGGTGGAGGTGGTGTTTCAGCAGCTGGAGATTTTAACACGCAACATGCCTCTGGTCGTGGACAAGCTGAATGGCATCAGCAATCCCATTGAGAAGAAGGGCTTGGAATTTGCCTTTGATGGCAGTGCCGAATCCTGCAAAGTCACCACCTTGATCAGCGCAGGAGGTCTCCCCAGGTATGGCACACTTTTAAATTACACCGCCAATGGGCAGATGATAGACTGTGATGCTTTTGTAAACCTAGGCATTCGCTACAAGCATACCTCCACCACCAGCTCCCCAAACAGAGACTATATCCCCATGTTGGTAGAGCTAGTGGATAAAGAGGGAAACACTATCAAGCAGGAGCATTTCCAAATCATGGTTAGAATTAAAGAAGGGACCGAAAACACAGCCCCTAAGCCAAGTTTTGTTGCTATGATGATGATGGAAATTGACCAGTTTGTGATGACAGCTATCACCAATGATATGCTGGCTGCTGAGGATGTTGAATCTGGTCCAGATGACTTAATTTTTAACATCACTTCGCCCCTGGGTCATGAGCAGGGCTACATTATCAGCACCGATGACCAAAATCTACCTATTACATCTTTCTACCAGAGAGACGTTAAAGATCTGAAAATAGCCTATAAGCCTCCCTCTGCCGATTCTGGCTCGGAGAGAATTTTTCAAATTGAGTTTGAAGTAGTCGACACTGAAGGCGCTGTCTCTGATGCGTTCGCCTTCATGATTGTTGTGAAGCCCATGAACACTTTAGCCCCGGTGGCAACTAAAAACACGGGACAGCTGCTGTTTGAGGGACAGTCAAGAGCGCTCTCAAGCACCCAGAATTTAGAAATCAGTGACGAAGATAATCTTGATGATGTCAGAATTACAGTTATTGATGGTTTAAAGCATGGTGAACTGACAGTGTTGGGAGCCCGTCGAAAATTCTTCACCCCCGCCGATTTGGATGCCGGGGTCGTGGTATACCAGCACGACGGCAGTGACACTTACAGTGACAATATAATTTTCCGCATGACTGATGGCAGCAATGAAGTTGAGTTTTTGTTCCCTATCACCATTGCACCCACTGACGATGAGCCTCCCATTATAAATACTAACACTGGGCTTGTGCTTTTCAAGAATGAAATCATGCAGATCTCACCCTTCATTCTAAGTGCCACAGACATTGACTCAGAGGACTCCACCATTAAATTTATCGTGGAGCCTCCTTATTCAACACTGGGTGAACTGCTCCTCCGACAAGCCGAGCAGCCCTCAGATTTGTCTGCCTGGAAGTTCAGTGACAGCGAAGAGATGTTTGAGCAGGTGGTGACGGAATGGTTTCAGCAGGACATCCTGGATGGGAAGCTGTTTTATCGTCACATTGGGCCTCACAGCACCACCACTGTCATGGATAATTTTGTGTTCCGGGTCCATGATGACAATGACCCCCCGAATCAGTCTGGGGAGCACACGTTTGCAATTAAAATCCATCCAGTAGATGACCTCCCTCCAGAACTTTACCCTGGCACTGCTTTATACATGACAGTGCAAGAATACGAATTGACCCACTTTAAAAAGAAGTTTTTGCGTTACACTGATCTGGATTCAGACGACCGTGATCTGAAGTACACCATCTCTAGGCCTCCAACTGATACAGACGAAAACAACCCCATCCCACTGGGCGAGATAGTGCTGACTGAGAGCCCTGACACTGTCATTACAGAGTTCACACAAGCTCAGGTCAATCATCACAAAGTGGCGTACAAGCCCCCAGATCAGGAACTGGGCATCACACCAAGAGTAGTGCAGTTCACTTTCATTGTGGAGGACACTGCTGGAAATTCAGTGAATGGCCTCTTCACAATTTTCTTGCAGCCAGTCGATAACAAACCCCCCCAGATCACCAACACTGGTTTTACAGTGCTGGAGAGAAATACTTACATCATAACTAAAACTGAGCTCGATGCAACTGACCAGGACACAGATGATGATAAAATTATATTCACATTGACCCAGGCTCCTCGATTTGGGCTGCTACAGTATCTGGGCATCGATATGTCTGTGGGAGAGACATTTGTACTTGAAGATATCGTCAGTGGCCACATCGCATATGTCCATAACGGCGAGGAGTCCACTAGCGACACAGTAAAACTTGATGTCAGTGATGGATTTCATGAGCTGCCTATCATTATTAAAATCACTGTGAAACCGGTCGATGACGAAACTCCAACCATTATGCTCCCATCCGGCCTGCTGGGTTCCTCCATTGATGTCCTGGAGAATGGAGCCACAGAGATCACTTCCAATGTGATTCAAGGCAGAGATGAAGACACTGATGACCTCATGCTCACATTTATAGTTGAGGAGCCACCAAAGTTGGGTGAAATTATGGTTAATGGGGTTGTCTCTGAGAGATTCACGCAGCAAGACATCATCAATGGAGGTGTCGTTTATGCTCACACGAGTGGGGAGATCGGGCCTTTTAAACAGCACGACTCCTTCAATCTCACCATCTCTGACATGTCTGATGAATGGGTTGTCGGTGGCAACAAAGTCCAAGGTGTCAGGGTGCATGTCACTATTCTACCTGTTGACAGCGTGCCTCCCATTGTCATTGTTGGCGATCAGTTCACCGTGCTTGAAGGAGAGAAGAATGCCATCACAATAACAAACCTCCAAGCTGAAGACGTGGACACAGAAAATGACGACATTCTGTGCACCATCATTGTCCAGTCCACATCTGGTTACATTGAAAACATATCTCCAGCCCCTGGGTCTGAAAAGTCCAGGGCAGGAACTGCCATCACGGCCTTCAGCATTAAAGACGTGCGTCTAGGTCACATTTATTACGTGCAGAGCATCCACAAAGGTGTTGAGCCAGTGGAAGACAGACTCACGTTCCGCTGTTCTGATGGTATCAACTTCTCAGAGCGTCACTTTTTCCCCATCGTTATCATTCCAACAAATGATGAGAAGCCCGAAATATTCATTCGTGAGTTTGTTGTCATGGAGGGCATGAGTCTGGTCATTGACACTCCCATTTTGAATGCAGCCGATGCAGACATTCCAGGGGATGATCTAGAGTTTGAAATAATTAGCCCTCCCAAACATGGCAATATTGTTCAGCAGCTTACCACAGGTACTGTTTCAGTTATTCATTTCTCCCTTGAGCAGATCAAGGAAGGCTCTAACATTGTCTATGAGCATGATGACTCTGAAACCAAAGAAGACAGCTTTGAGGTCAGACTTACAGATGGAAAACacactgtggaaaaaaaagttcTCATCATGGTCATTCCAGTGGATGACGAGACTCCAAGAATGACAATTAACGACGGACTAGAAGTTGAAATCGGGGAGACAAAAATCATCACCAACAAAGTCCTTAAAGCAACAGATTTAGATTCTGAAGACAAGAGTCTGATGTATATAATCCGTTACGGACCAAGTCAAGGCTACCTTCAGCGCATCACCAAGTTTGGAGACGTGCTGGGAAACATAACTGTTGAAATGAACTTCACCCAAGATGACATAGACAAAGGACTGGTTCAGTATGTCCATACAGGCCAGGAAGGGGTTCGCGACCTTGTCAAGTTTGATGTCACGGATGGGATTAATCCGCTCATTGACAGGTACTTCTATATTAGCATTGGCAGCATTGACATGGTCTTCCCTGACGTCATTAACAAAGGTGTGACCCTGAAGGAAGGGGGTAGAGTGACCCTGACCACTGATCTGCTGAGCACCACTGATATCAACAGCCCTGATGAACACCTGAGCTTCAGCATCACTCGCGCCCCCAGCCGTGGACACTTGGAGTGCACTGACAGACCTGGAGTTCCCATCACCACCTTCACTCAGCTGCAGCTGGCAGGCAACAAGATCTACTACATCCACACCTCAGACGACGAGGTGAAAATGGACAGCTTTGAGTTTGAAGTAACAGATGGTTACAACCCCGTGTTCCGCACTTTCAGAGTGTCCATCACTGATGTGGACAATAAAAAGCCGGTACTGACCATCCACAGCCTGGTGGTTGGCGAAGGAGAGCTAAAGCTGATCACTCCTTTTGAACTCACCGTGGAGGATCGGGACACGCCCGACAACTTTCTGCGTTTCACCATCACCCAGGTGCCAGTCCATGGGCAGCTGCTGTACAATGGCACCCATGCTGTCACTAGCTTCACCAAACAAGACCTAAACGAGAACCTCATCACCTACAAACATGACGGGACCGAGTCTGGTGAGGATAGCTTCTCCTTCACTGTGACGGATGGCACTCACACAGAATTCTATGTCTTCCCCGACACTGTCTTTGAGACTCGTAAGCCCCAGACAATGACCATCCAGATCAACTCGGTTGACAATGGCGTCCCCCAGATAGTCGTCAACAAGGGCTCTCCCACGCTCCGGGTCCTGCACACCGGCCACCTGGGCTTTGTGATCACTAGCAAGGCTCTGAAGTCTGAGGACCGGGACAGCCCACACAATGTCCTCAAGTACTGGATTGCCGAGGCTCCTCAGCATGGCTACATCATCAACACGGCCCTGGGGAACGACAGCGTCCAAACCTTCACTCAAGCTGATATTAATGAGATGAAGATCTGTTATGTGCTGCTCGACGGGGAGAATGCTACCAGTGATATATTTTACTTCACAGTTGAAGACAAA

Function

symbol description
frem3 Predicted to act upstream of or within cell communication. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including endoderm; forebrain; head; median fin fold; and musculature system. Orthologous to human FREM3 (FRAS1 related extracellular matrix 3).

NR:

description
PREDICTED: FRAS1-related extracellular matrix protein 2-like, partial

GO: NA

KEGG:

id description
K23380 FREM1_2; FRAS1-related extracelluar matrix protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015736 True 5121 mRNA 0.48 2 19058062 19063854

Neighbor

gene id symbol gene type direction distance location
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding upstream 206784 18840646 ~ 18851278 (+)
AMCG00015731 NA coding upstream 230047 18806089 ~ 18828015 (+)
AMCG00015727 NA coding upstream 341548 18689738 ~ 18716514 (+)
AMCG00015728 NA coding upstream 375254 18677818 ~ 18682808 (+)
AMCG00015726 slc10a7,LOC106591891 coding upstream 599892 18452377 ~ 18458170 (+)
AMCG00015737 frem3,LOC107725184 coding downstream 36366 19100220 ~ 19108988 (+)
AMCG00015741 NA coding downstream 385052 19448906 ~ 19512925 (+)
AMCG00015742 NA coding downstream 576192 19640046 ~ 19671896 (+)
AMCG00015744 NA coding downstream 640569 19704423 ~ 19705094 (+)
AMCG00015746 LOC106527319,LOC108251603,LOC103373330,LOC100701224,LOC102312318,LOC102313262,LOC101469181,LOC104949412 coding downstream 698947 19762801 ~ 19791302 (+)
G100082 NA non-coding upstream 213613 18758062 ~ 18844449 (+)
G100046 NA non-coding upstream 427918 18628322 ~ 18630144 (+)
G100005 NA non-coding upstream 759758 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 1101432 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 1124734 17932999 ~ 17933328 (+)
G100143 NA non-coding downstream 56974 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 69210 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 649033 19712887 ~ 19713244 (+)
G100241 NA non-coding downstream 662718 19726572 ~ 19782763 (+)
G100349 NA non-coding downstream 1260756 20324610 ~ 20327167 (+)
AMCG00015725 smad1 other upstream 286096 18744887 ~ 18771966 (+)
G100007 NA other upstream 732158 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1926287 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 2559531 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 2600220 16433443 ~ 16457842 (+)
G100338 herc3 other downstream 1203553 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 3614983 22678837 ~ 22683895 (+)
G101061 NA other downstream 5801235 24865089 ~ 24865552 (+)
G101248 NA other downstream 7200061 26263915 ~ 26264308 (+)
G101275 NA other downstream 7309299 26373153 ~ 26377699 (+)

Expression


Co-expression Network