AMCG00015737 (frem3,LOC107725184)


Basic Information

Item Value
gene id AMCG00015737
gene name frem3,LOC107725184
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19100220 ~ 19108988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015737
CCCTCACTGTACTTTGGAGACCTGGAGTACACAGTGGATGAAAGCTCTGGCTACGTGGAGGTGCGTGTGTGGAGAACAGGGACAGATTTGTCTAAGACAGCGACCGTCACTGTGCGCTCCAGGAAAACCGAGCCAGTCTCAGCAGAAGCTGGTATTGACTACGTGGGGATTAGCAGAAACCTGGATTTTGCCCCTGGGGTGACGATGCAGACCTTCCGCGTGACCATCCTGGACGACCTGGGCCAGCCGGTGCTGGAGGGGCCCGAGAAGTTTGAGCTGGTCCTCCGAATGCCCATGAACGCCGTCCTGGGAGAGCCCAGCAAGACCATCATCACCATCAACGACTCCGTCTCAGACTtacCTAAGGTCCAGTTCAAGGAGCCCCTCTACACTGCTGATGAGGTGGATGGGCAGGTCAGTGCCATTGTGTACCGCAGTGGAGATATTAGCTATAAGTCCACTGTGAGGTGCTACACTCGCCAGGGCTCCGCACAGGTCATGATGGACTACGATGAGCGTCCCAACACTGACACCTCCATTGTCACCTTCCTGCCAGGTGAATCGGAGAAGCCCTGTGTGGTGACTCTGGTGGATGACTCTGTCCACGAAGAGGAGGAAGAGTTTCGTCTGGTGCTGGGGAATCCCAAAAGCGAATCACCATTCGGGGCGTCTCTGGGAGAGCAGAAGGAGACGCTGATCAAAATTACAGATGACAAAGACAAACCGATTATCAAGTTTTCTGAAATCAAATACAGTGTCAAGGAACCACAAGTGCAGGGTGAGATCGCTGTGGTGAAGATCCCAGTGCTGCGCCTCGGGGACACGTCCAAAGTGTCTGTGGTGCGAATTCACACGAAGGACGGTTCTGCAACCTCTGGGGAGGATTACAACCCCCTGTCAGAAGATGTGGAGTTTaaggaaggagagaaggagcACTTTGTGGAGGTGGAAATTCTGTacgatggggagagagagatgagagaggcCTTCACTATCCACATGAAACCTGATGAGTACATGGTGGCTGAGACACAGATGAGCAAGGCCATCATATACATCGAGGAGATGGACAGCGTGGCAGACGTGACTTTCCCCGCGGTGCCTCAGGTCGTCTCCCTGCTCATGTACGATGACACAGCCAGGAGCAAGGACCATCCCAACCCTGCCACTGGCTACCCTGTAGTTTGTGTAACGGCCTGTAACCCCAAGTACTCTGATTTTGACAAGACCGGCTCCATATGCTCAGCGGAGAACATCAACGACACGATGACACAATACCGCTGGCTGGTGAGCGCGCCCAGTGGCCCGGACGGCGTCACCAGCCCCATGAGGGAGGTGGACACGAACACTTTCTTCACCAACACCAAGTCCATCACGCTGGACGCCATATACTTCCAGGCAGGCTCCCGGGTCCAGTGTGCGGCCAGGGCCTTCAATGCCAATGGAGATGCTGGCCTGGAGCTGCTCAGCCCCATCGTCAGCATCAGCGTGGAGGAGGGTCTCTGTCAGCCTCGGGTCCCAGGAACAGTTGGGGCCGAGCCATTCTCTGCCAAAATTCGCTACACCGGCCCAGACGACCCCGACTTCCCTAATCTCATCAAACTGACCATCACTATGCCCCACATGGATGGCATGTTACCAGTCATCTCCACGAGGCCCTTGTCCAACTTTGAGCTGACTCTGAGCCCAGATGGCACCAGGGTGGGAAACCACAAATGCTCCAACCTGCTAGACTTCAACGAGATCCAGACCCAGCATGGCTTCCTCACTGAGGGCACCAAGAACCCAGAGGTGATCGGCGAGACCTCCCCCTACCAGTACAGCACCGCCCTGCGCTCCGCCAACTCCCTGCGCTTCTACCGCAACCTCAACCTGGAGGCCTGCCTGTGGGACTTCAACAGCTACTACGATATGTCGGAGCTGCTGACAGACTGCGGGGGCAAAATCGGCACCGACGGCCAGGTGCTCAACCTGGTGCAATCCTATGTCACGCTGCGGGTGCCGCTCTATGTCTCCTATGTGTTCCACTCCCCCGTGGCAGTCGGGGGCTGGCAGCACTTCGACCTGCAGTCCGAGCTGCGGCTCACCTTCGTCTATGACACTGCGATCTTGTGGAAGGACGGGATTGGCAGTCCTCCGGAGGCCGAGCTGCAAGGAGCTATGTACCCAACCAGTATGAGAATTAATGAAGAGGGCCGTCTAGTGGTGAACTTCAAGACCGAAGCCCGTTTCAGAGGACAGTTCGTGATGTCTCACCCAGGTACCTCTTTAACATCAATGGTGATGTCAGCGGATCACTCTGGGCTCACCTTCACTCTGTCTCTGGTGCGGACAGAGCCGACCTACAACCAGCCAGTTCAGCAGTGGAGCTATGTCTCCGATTTTGCAGTACGAGACTACTCTGGCACATACACCGTGAAGCTCATTCCCTGCAGTGCGTCACCTAACCTGGAGTACAGTATCCCCCCTGTGTGTCACCCCCGGGAGCCCCTCACCTTCGACATGGACATCAGGTTCCAGCAGGTCAGTGACCCGGTGGCTGCCGAGTTCAGTCTCAACACTCAAATGTTCCTGCTCTCCAAGAGGGAGCTGTGGCTGTCCGACGGGTCCATGGGGTTCGGGGAGGGAACTGATGTTGCCTTTGCTGAAGGGTCGCATATCTATGGCCGGGTCATGGTGGACCCTGTGCAGAACCTGGGGGACTCGTTCACGTGCAGCATTGAGAAGGTGTTCCTGTGCACCGGGGCCGATGGGTACGTTCCCAAGTACAACCCCGTCAACAAGGAGTACGGATGCCTGGCCGACGCGCCCTCTCTGCTCTACCGGTTCAAGATTCTGGATAAAGCCCAGCCAGAGACCCAGGCCCGGGTGTTTGGGAATGTGGAGTTTGACGCCAAGCTCGCCATCGACGCGCCAGGTGCCCTGCCCCTGGTGAGACAGCCAGGCTCAGACGGCTTCACCGTGTCCTCAACACCCCTCTTCCAGGTGACTGCAGGCCGGGAGTGGTACATCCACACCATCTACACAGTCCGCTCTAGAACGAACGCCAACCGAGGCATTGGCAAGAGGAGCCTGGAGTATCACCACAGCCTGTCCGCGGCCGCTGTGGCCCCCAGAGGTGAAGTACGCAGCCGGCGGGCGGCGCCCGAGCCAGCGGAGGACATCGGCTCCGAGAACAACCGGGGAACCAACATCCAGCACATCGCCCTGGACCGTGCCAACAAGCTGGTGGTCAGCCAGCGCGAGTCCTGGCCCAGAGAAGAGCTGCTGGAGCGCCCCCTGCTGGAGAGCTCTGGGCAGAAGACCACAGAGCTGGCGCTGCTGCCATTAGTGGCCGGGGCGGCCGGGCTGCTGCTCCTGATCTGCGTCACCACGTGCGTCGTGCTCCTGCTGCGTCGCAAGAGACGCCGCTCCTCGGGTGCCAAGAAACCCCCGCCCTACTCCACCTCCTCCTGCTCGGCCTACCAGGGCAGCCGGAGCAGCAGCGAGACTGTGAGCACGAGGCACAGCACTGACAGCTCTGAGGTT

Function

symbol description
frem3 Predicted to act upstream of or within cell communication. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including endoderm; forebrain; head; median fin fold; and musculature system. Orthologous to human FREM3 (FRAS1 related extracellular matrix 3).

NR:

description
PREDICTED: FRAS1-related extracellular matrix protein 3

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015737 True 3528 mRNA 0.58 18 19100220 19108988

Neighbor

gene id symbol gene type direction distance location
AMCG00015736 frem3,LOC106610210,LOC106610213 coding upstream 36366 19058062 ~ 19063854 (+)
AMCG00015734 anapc10,LOC107550153,LOC107564421 coding upstream 248942 18840646 ~ 18851278 (+)
AMCG00015731 NA coding upstream 272205 18806089 ~ 18828015 (+)
AMCG00015727 NA coding upstream 383706 18689738 ~ 18716514 (+)
AMCG00015728 NA coding upstream 417412 18677818 ~ 18682808 (+)
AMCG00015741 NA coding downstream 339918 19448906 ~ 19512925 (+)
AMCG00015742 NA coding downstream 531058 19640046 ~ 19671896 (+)
AMCG00015744 NA coding downstream 595435 19704423 ~ 19705094 (+)
AMCG00015746 LOC106527319,LOC108251603,LOC103373330,LOC100701224,LOC102312318,LOC102313262,LOC101469181,LOC104949412 coding downstream 653813 19762801 ~ 19791302 (+)
AMCG00015745 rnf150,LOC107729769 coding downstream 704602 19813590 ~ 19821835 (+)
G100082 NA non-coding upstream 255771 18758062 ~ 18844449 (+)
G100046 NA non-coding upstream 470076 18628322 ~ 18630144 (+)
G100005 NA non-coding upstream 801916 18297039 ~ 18298304 (+)
G99932 NA non-coding upstream 1143590 17954485 ~ 17956630 (+)
G99934 NA non-coding upstream 1166892 17932999 ~ 17933328 (+)
G100143 NA non-coding downstream 11840 19120828 ~ 19125504 (+)
G100145 NA non-coding downstream 24076 19133064 ~ 19167834 (+)
G100232 NA non-coding downstream 603899 19712887 ~ 19713244 (+)
G100241 NA non-coding downstream 617584 19726572 ~ 19782763 (+)
G100349 NA non-coding downstream 1215622 20324610 ~ 20327167 (+)
AMCG00015725 smad1 other upstream 328254 18744887 ~ 18771966 (+)
G100007 NA other upstream 774316 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 1968445 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 2601689 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 2642378 16433443 ~ 16457842 (+)
G100338 herc3 other downstream 1158419 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 3569849 22678837 ~ 22683895 (+)
G101061 NA other downstream 5756101 24865089 ~ 24865552 (+)
G101248 NA other downstream 7154927 26263915 ~ 26264308 (+)
G101275 NA other downstream 7264165 26373153 ~ 26377699 (+)

Expression


Co-expression Network