AMCG00015747 (ucp1,LOC107703842,LOC106610252)


Basic Information

Item Value
gene id AMCG00015747
gene name ucp1,LOC107703842,LOC106610252
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19960544 ~ 19968342 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015747
CCAGGACAGATACAGTCAGCCACAAAATTAACATGATATACTTTTCTTCTTATAGACATGTACATTTAGGTGTTTCGAAATAATGTTCTTTTAAATCCAAGAATGAACCAGTGGAGACCAGCTGTTTATGACAGAAGGGGTTATGAAACGATCCTGTTATCAGTGTCCCATTGAACCGCAGTATCATAACCATGAACTCCACTcaacttaaaatgaaacattatctGAAGCAAGCCATTAGATAAGTTTGGAAAAGAAATTGTATAGGTACTCCATGTTAATAGCAAGAGATTTGTGTCGACTACAAGATCACTGAAACTTGgaatatacacatttgtaataataatattatagaCACTATACTAGCTGGATGCAAAGGTTAAATAAAGTAGAATAGACAGCCATTCATTTTTCACCAGTTGTCTGCAAAATTATAATCACAACTCTTTTTTCTAttgacataaaacataaatgataATGGaaccagaaaacaaatgcaagaacAACTAACAACACGAACAACCATAACAGCTCTTAGAGAAATTAAGAAGTTGCTGATTGTAATGATTGATTGtggaaaaatgaaatgcattttaaataactcATTCATGATGTATGGAAGGACTAGTCAGTTGTAGTTCATGTAGCCAGGCCAATATAAGgctaaaaaaaaagctttctcGCTCTATCTCCTctacaaataaatcacattacatGTCCATTGTACTAAAAGTAGAGGTATGTAGGAATCTCAATCATGGCTTTGAGAATACTTTAATTTACAATACTTGTCTGGAGAGAATACCatgtgttataaatatatacaatgatACAATATAGCTTGGTGCACCTTTGGATGATGAGTCCATGAGATTGTcatatcattattaattaaattaataaacatacagGATGCATGagatttctgttttccttttcaaaccAAGGAATCATTTAGAGTGCTTAtgatcttatttttaaaaagcttaacATGTCCCTTAAAGTCTGAACCCATGTCATTTGCTTGCTTAGTTATTTCTTAAATTTCTAGGTAGATAAGCAACTGTTGTAATAGCAGAATCGACTCACCAGATTCCTGCAACTTTGGTCACGTTCTTGTAGCGCATATTTCCGCATTTCTGCACACATCTGCACTTTTCGTGTAATGTAATTGGTTCAaaagtgcagatctgcgcagaactgcggaaatgtGCACTGCAAGAACGCGATTTTTTTACCCTGTTAGTAACCATTTAATGCTTTTCCTGTTGGCCAAAGGTGACCGTTCACACACCCTCTCAACCATTGGCTGTGCGGTGGCGAGCCCCTGCAACCTGCTACTGTGATTAGAAATAATGTAAGGACTAGTAGAGGTTCAATTTGATGACTGGACCCATAATTAATATACAcaataatcatacattttaaaaaactgaaaggatattcaattattgtaatttgtatcATAACAATGCATGAAATTAATGTAAAGACGATATTAGGGGTATGATTGTTTCAAGTTATGAAAGAACAAAATTACGttcaagaaaattaaaataaataattttccaaTAATGCACTTACGCCAGCTTGGATATCGTGcccaaatacaaaatgacatAGTTTGCCCTTTAACTGATGGTACAGAAACAACCCAGTAatcaaccaaataaatacataaatgcacagATCCACATAATTGCACCGATCCTATATCCGAAGCTGCATAAATGCGTGGCAGTCATTGTGCAGAGACAGGGTTAAGGTCTGCAGCAGACAAACAATGACAGTGGACTTTGTCAAACAACTCGGCGATCATGGACCAAGACACGCCTCTCTGACCAGGCTTCAGAAAAGtcattataaaaagaaaatcacaaattCATTCCCCTTTCACTTCTTAGTTTAAGAGGACAATTAAAGTGcctcacatttatttaaatacattgctcTAAGGTATCCCGAAAAGGATCTGAAGTAATCATCCACTGGATTTCACAAACTCCAAAGATGGTCGGACTGAAGCCTTCAgataccccccccacccagggAGTGAAGTTCCTCAGTGCTGGAACCGCTGCCTGTATCGCAGACCTGTTCACCTTCCCCCTGGACACGGCCAAAGTTAGATTACAGATTCAAGGGGAGAAAGTGGCTGCCGAAGCTGCAAGGAACATCAGATACAAAGGAGTGTTCGGGACCATCACCACCATGGTTAAAACAGAAGGACCAAAAAGTCTCTATAATGGGCTAGTGGCTGGACTTCAGAGGCAGATGAGCTTTGCTTCTATCCGCATCGGACTTTATGACACAGTCAAACAGTTGTACACAGGTGGAAAAGACAacGCTGGTATTGGCATTCGGATCCTGGCAGGCTGCACCACAGGGGCCATGGCAGTGTCTATAGCTCAGCCCACGGACGTGGTCAAAGTCAGGTTTCAAGCTCAGTTGAACCTCAAAGGTGTGGAGAGGCGATACAAAGGCACCCTTCAGGCATACAGGCAAATCTTCAATCAGGAAGGGCTGAGAGGACTGTGGAAAGGCACACTGCCTAATATCACCAGGAATGCCCTTGTCAACTGCACAGAACTTGTGACTTATGACATCATTAAGGAGGCCATTTTGAACCACAAACTGCTGACTGATAATCTGCCATGTCACTTCGTGTCAGCTTTCGGGGCTGGGTTCTGCACTACAGTAATAGCCTCCCCAGTGGATGTTGTTAAGACTAGGTATATGAACTCACCCCCAGGACAATACACAAGTGCGCTAAACTGTGCTTGGACCATGCTCACCAAAGAGGGGCCAACAGCATTTTATAAAGGatttgTTCCCTCATTCTTAAGGCTGGGTTCCTGGAATGTAGTGATGTTTGTCTCTTATGAACAGCTGAAAAGGGCAATGATGATGTCCAAGCAATCTATAGAAATTGCTACGTAACTGATCTGCCCCGCTAGAGACAATAACCCCCATGAGTTTTTCCTAGtatgaaaaaaatgcatctaATGGACCAATCACCCTGTGCAATTTTGAGCCTCAAAAAGACCACTCGGAAGAATAGCCCTGGATGTAACGGCGAAGAAGGAATGCATTATTACAACGGGGAGAATGACATGTCTGAGGGTCTTTCAGAGCCTgaagttgtttatttaattaccaAAGGTAATTACTCCTTTGTAAAAAGGGAAAGATGGTTGTGCATGTTAATGTATGCATTGACTGAAAGTAATTAGCCACAAGTGGCTGAGCACAACTGTATCCTCACAGAATTGTGAAAGAGAAAGACGTCCCTGGGAGACAGCAAGAAGGTCCCTTTTCCTCCTGATTCTACAAAGTGGATTCTCAATAAGTTTTAGTTTCTGAATTATTGCAGCCATGCTGGAGCCCTGTTTTCTAGTTTGAGAGTGAAGTTATGTGTATCAGAATTAGGTTCATATATGGAGACTTACTTTATTCTGATTAGGTCTTAAAACCTAAAAGTGAATACTAACCTAGCTGACCAAGAAGCAGTGAGGATTGGAAATGAAACTGGGGCACCGAGCTCCCAAGTCCACAGCAGACTGAATAAATCAGGTTTAGCTTGCTACAACATACATGCTTGTTAATGGAacagtcatatatatattttttaaccaaagtaccaattcacatatttatattgaCAATTaaccataataaaatacatatttttaatacaacacTTTATTTGCGTTCTTAATACATTCATGCGAGTATTACACTATTTAGATATTCTATGGTAAATTGGTTGCcttgatgttttaatttggaaattattCAATGATTCAGCTGGAAAAAGACAAGGTGGTTAGTCCTCTAGAGAAAACAGAAGCCCGGAGGATCACCTAGATTATACATTCAGATTACTTTTCTATTTGATACAAACATTGCATGCATTTCTGAATAATGCACCAGGTCAGAGTccaaatagacacagacaccTTTGTTGCTTTTCCCCCTAAGAcatattttaaggaaaaaagtttGTTATACACTTACAGGGCTGGATTATGccttaacatatatatattcaatacaaaacaactaaattgtGACTTCAAAGGTGTGGAGAGGCGATACAAAGGCCTCTTTTTTATCATGTCCTTGGGTTTACATAAGCAACTTATCAGTaaatatactttgttttaattttacaacaaatgcaaaatgcataaaataattacaatttaattctaCTATAAATattgtccatccatccatccattttcaaaaaacacttatcctggtgagagTGGCAGGGAAGCCAGAACCAAtccccggcaggcatagggcgcaagacAGGAATACACCCAGAGTGGG

Function

symbol description
ucp1 Predicted to enable oxidative phosphorylation uncoupler activity. Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in mitochondrial membrane. Predicted to be integral component of membrane. Is expressed in several structures, including brain; heart; liver; median fin fold; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in hypertension and type 2 diabetes mellitus. Orthologous to human UCP1 (uncoupling protein 1).

NR:

description
PREDICTED: mitochondrial brown fat uncoupling protein 1

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0006839 mitochondrial transport biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15103 UCP2_3, SLC25A8_9; solute carrier family 25 (mitochondrial uncoupling protein), member 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015747 True 4338 mRNA 0.39 7 19960544 19968342

Neighbor

gene id symbol gene type direction distance location
AMCG00015748 tbc1d9 coding upstream 54906 19867869 ~ 19905638 (+)
AMCG00015745 rnf150,LOC107729769 coding upstream 138709 19813590 ~ 19821835 (+)
AMCG00015746 LOC106527319,LOC108251603,LOC103373330,LOC100701224,LOC102312318,LOC102313262,LOC101469181,LOC104949412 coding upstream 169242 19762801 ~ 19791302 (+)
AMCG00015744 NA coding upstream 255450 19704423 ~ 19705094 (+)
AMCG00015742 NA coding upstream 288648 19640046 ~ 19671896 (+)
AMCG00015756 NA coding downstream 67006 20035348 ~ 20038407 (+)
AMCG00015754 NA coding downstream 142363 20110705 ~ 20111939 (+)
AMCG00015757 NA coding downstream 168346 20136688 ~ 20145630 (+)
AMCG00015758 NA coding downstream 215847 20184189 ~ 20225089 (+)
AMCG00015759 NA coding downstream 306601 20274943 ~ 20299858 (+)
G100241 NA non-coding upstream 177781 19726572 ~ 19782763 (+)
G100232 NA non-coding upstream 247300 19712887 ~ 19713244 (+)
G100145 NA non-coding upstream 792710 19133064 ~ 19167834 (+)
G100143 NA non-coding upstream 835040 19120828 ~ 19125504 (+)
G100082 NA non-coding upstream 1116095 18758062 ~ 18844449 (+)
G100349 NA non-coding downstream 356268 20324610 ~ 20327167 (+)
G100461 NA non-coding downstream 811004 20779346 ~ 20780467 (+)
G100483 NA non-coding downstream 859986 20828328 ~ 20828614 (+)
G100502 NA non-coding downstream 1095708 21064050 ~ 21065385 (+)
G100507 NA non-coding downstream 1338264 21306606 ~ 21310605 (+)
AMCG00015725 smad1 other upstream 1188578 18744887 ~ 18771966 (+)
G100007 NA other upstream 1634640 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 2828769 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 3462013 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 3502702 16433443 ~ 16457842 (+)
G100338 herc3 other downstream 299065 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 2710495 22678837 ~ 22683895 (+)
G101061 NA other downstream 4896747 24865089 ~ 24865552 (+)
G101248 NA other downstream 6295573 26263915 ~ 26264308 (+)
G101275 NA other downstream 6404811 26373153 ~ 26377699 (+)

Expression


Co-expression Network