AMCG00015765


Basic Information

Item Value
gene id AMCG00015765
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20484887 ~ 20501432 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015765
TTGCTCACAGCGGCTGAGCTGTTCTCCAGAAGCAGATCCCGGCGCTCGGAGCTGTTCACGGATCATGTGGTGCTGAAAGCCGGGCCAGACGCATCTCCTGGATGCCGAGGCGACAAACGGCTCAGTGAAATCTATATATGCAGTGCGCTCTGGAAAACAGAACTGACTATAATGTCAGATAAATGTACTGGAATGTGTCAGAAAGCTCTCCTGTATTCCTTGGTGTATTTTATCAGCATCATCGTCTACACACTGTCAGAGGAAGCACCTCCTTTTCTGCACATCACCTGGCAATTCGGATCCACCACAGTCATCTTGAAGACCATCCGCTTCACCGAAGGACAGGCGTCAGAAGACCCAAGCAAGACCTACATCCCCTTGCCGAAGTATCAAGGCCGGGTCTCTGTCTTCTCCCACAATGCTTCTCTCCTCATCCAAAACCTCTCTCTTTGGGATTCAGGGACATATACCTTCACGGTCAAAAACTCAAACACTGCCATCACCAAGGTGCTGAGTGTGAACTTAACAGTTTTACCAGATATAGGAAATCACAATCCATATGGAGATCTGGAGCTGAATTCAACAGACCTGACTTCTTGTCAAGGCTCGCTGTTCTTCCACAGCACTGCCGGGCTGGCCATCACCCTGCGGCTCATCTCCCTCGGCATCTCCTTCGCTCTGCTgtccttcatttatttcatgGCCAAGAGAACATGCAACACAGAAGAGGATTTCTTTTAGAATACCCTAATAAGCCCTGCCACAGCTCAAAACCAGCCGCACAAGACACTGAACACTGACACTGTTTGGAAAAACGCAGATTCAATTAAACCCAAGAATCGTTTCtggattgtttattttgttgttgtggtttttggtttgtgttttttgtatgagATGTATAAGATGGACTTGTATAGTTGTGttccatacaaaatataaaaacaactcAACAAGGGGAactggggttttgttttttgggggtgaAACTTTGTGTATTTCCTTTAATATAGTTTAAACCCTTGACATAGTGGCTGTTGTAAGTATTTGAACACCACAAACTGTTTAAACCAACCCTTGCTCAAGTTGCTCAGCAGTGTACAGCTCCCAGGGAGTCACAGTTCAGCATTATTGTAGTTATCTAAATGATCAGTGGTTTAATGCTCTGAAGcacttttaaattaatctctTAAAGTACACAATGGTTTCCCTGAAGAACTCGAATGCACcagaaaaaagtacaaaaataaaagatgccTCCAAGACCTGAAGCTACACAATGCTGGGTTAAGAATCTCTTTCATTCAGAGTAATAACACTGGTAACCCAAGAACAGTTTACTTGTTTCACCACACTTTTTAATCTGTTCCCTTTGCCTGATTTACTGTTACTTTTAATTGGATCGACCTTGAATGTAATCAGATGCAAATGTAAGCAAATCCACACGGCCCTCAGCTGGTACGGCTGGTAATGTTTGATgcgggaaaaataaataatgatttaattacttCTATACATAATAGCTGGCAGGCCCGTTTAGAAAGCACGACATGGTTAATGCTCGCTTAATGCGTTGGCTTCTGATGTTTTtagactgaaaacaaatgtgttttcctgCATGTGAGCTTTAAGGGGAGACGGGATTAAATGTGATTGCAGGATACGACAGTGAATTAATTTCAGACTCCTACACACTTGCCTTTTTAGAGATGGCTCTCACTTCAACTTGTAAGCATGACACATAGCTGTCACATTAAATGCCGACTGCCACTCTTGTGTCACTTCAAGCTGGGCAGGCTGATTAAGTGAAAGTGTCAGTTTAAATGGATTGAAAGTCTGATTCTGATTTACGCTCATTAAAAGTGAATTACAACAGTAGACTTTTAAGGGTGCAATTTGGTGAGGGAACCTAATTCCCCTGGATTTGCAACTTTAGCCCCATAAGTGTGATGTGCCTGAGAATTGGCTTCTATTAATGGCTGGAACATAAGTCTCAGTGTTTCAGTGACTTTCTCTCACAAAAAGCATGAACTAGTGCTGCTTTTGTACAATCATGTGTACGGCAACAACCATGTTTCATTTGACTTCTACTCCCAGACACAGGTTTggacacccttcatttgaaccAATGTAGTTTCTAACTTAAGACAGGTATGCACACATCATAACCCACTTATATCAACTGGAATATTTAGTACTAAATGCTAGGATGTGTCAGCGTTTATTAAACTTTAATACAGTCGTCAGGCACTGTACTTTTCTTCCCATTTGGGAAAGGATAGGATTTAAATATCACTGCAATTGTGAACACCTAATATCTACTTCCAAAATAATTATTAGTTAGATCTGGGTGATTAATTAACTACCGATCATTAACTATCAGTGTATACAGACTTGGAAACATTGCATTGTGATCAATGAAATGGGTGTTTTGGGCAATAACAGACAGATAACCTGCAACAGGTCTGTACACCCTCAAGGTACTGAGTTCCCTCAATTGAACAGGTTTCTTTTTTATCAAAATAACTAAGATGTACTTTGAATTTTGCAGTATCCATTGCAATGCTACATCACTCTTTGTATCCTTACATAAGTGTGTGATACATCATATTATGatgtaaattgtttttcatattgtacATTTCTGAAGCTTGTAAGTCACCTTTGATAAAGgcaaccaat

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015765 True 2682 mRNA 0.41 4 20484887 20501432

Neighbor

gene id symbol gene type direction distance location
AMCG00015759 NA coding upstream 185029 20274943 ~ 20299858 (+)
AMCG00015758 NA coding upstream 259798 20184189 ~ 20225089 (+)
AMCG00015757 NA coding upstream 339257 20136688 ~ 20145630 (+)
AMCG00015754 NA coding upstream 372948 20110705 ~ 20111939 (+)
AMCG00015756 NA coding upstream 446480 20035348 ~ 20038407 (+)
AMCG00015768 LOC106565696 coding downstream 54443 20555875 ~ 20556255 (+)
AMCG00015766 NA coding downstream 85438 20586870 ~ 20619770 (+)
AMCG00015767 NA coding downstream 121361 20622793 ~ 20656527 (+)
AMCG00015773 smyd5 coding downstream 259398 20760830 ~ 20774620 (+)
AMCG00015775 NA coding downstream 301265 20802697 ~ 20802933 (+)
G100349 NA non-coding upstream 157720 20324610 ~ 20327167 (+)
G100241 NA non-coding upstream 702124 19726572 ~ 19782763 (+)
G100232 NA non-coding upstream 771643 19712887 ~ 19713244 (+)
G100145 NA non-coding upstream 1317053 19133064 ~ 19167834 (+)
G100143 NA non-coding upstream 1359383 19120828 ~ 19125504 (+)
G100461 NA non-coding downstream 277914 20779346 ~ 20780467 (+)
G100483 NA non-coding downstream 326896 20828328 ~ 20828614 (+)
G100502 NA non-coding downstream 562618 21064050 ~ 21065385 (+)
G100507 NA non-coding downstream 805174 21306606 ~ 21310605 (+)
G100568 NA non-coding downstream 1312939 21814371 ~ 21814715 (+)
G100338 herc3 other upstream 216602 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 1712921 18744887 ~ 18771966 (+)
G100007 NA other upstream 2158983 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 3353112 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 3986356 16494692 ~ 16498531 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 2177405 22678837 ~ 22683895 (+)
G101061 NA other downstream 4363657 24865089 ~ 24865552 (+)
G101248 NA other downstream 5762483 26263915 ~ 26264308 (+)
G101275 NA other downstream 5871721 26373153 ~ 26377699 (+)
G101400 NA other downstream 7389120 27890552 ~ 27992014 (+)

Expression


Co-expression Network