AMCG00015781 (atrn)


Basic Information

Item Value
gene id AMCG00015781
gene name atrn
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 21157154 ~ 21224579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015781
ATGGGCTCCGCTGGGTTCCTGACAGACGGGCCGGGGAATTACAAGTACAAGACCAAGTGCACCTGGCTGATTGAGGGACAGCCTAACACCATCCTGCGGCTGAGGTTCGACCACTTTGCAACAGAGTGCAGCTGGGACCACCTGTACGTGTATGACGGGGATTCCATCTACGCCCCCCTGCTGGCTGCGTTCAGTGGGCTGATTGTCCCAGAGCGCTACAGCAACGAGACCATTCCTGAGGTGGTGTCCAAGTCTGGATACGCCCTGCTGCACTTTTTCAGTGATGCGGCATACAACCTGACCGGCTTCAACATCTCCTACAGGATCAACACGTGCCCCAATAACTGCTCTGGTCGCGGGGAGTGCCAGCTGGGCGTGGGCGGCAGTGCGGTGTACTGTGAGTGCGAGCATCACTGGAAAGGAGAGGCTTGTGACATCCCCTACTGCCAGGAGAACTGCGGCGAGCCCAAGCGGGGCTTCTGCAAACCTAACAGCACCAAGGGCTGCCAATGCAAGGCGGGTTGGCAAGGTCCAGATTGCTCTATCCCAATGCCTGCCAACCAGTCGTTCTGGACACGTGAGGAGTATGCAGTGCGTAGCTTGGCCCGCGCCTCCCACAAAGCAGTCGTGGACGGGGGCATCATGTGGGTCATTGGGGGGTACATGTTCAACTACTCGGACTACGAGATGGTCAAAGCGTATAACCTGAATACGCAGGAGTGGCTGCCTCTGAAAATGTCTGCGAACTCTGTTACGGGGAGATATGGTCACTCCCTGGCTCTGGACAAGGATAAGATCTACATGTACGGTGGAAAGATCGACTCGACCGGGAACATCACCAGCCAGCTCTGGGTTTTCCACGTGCAGAACCAGTCCTGGGTGCTGCTCAGTCCCCACGCCAAGGAGCAGTACGCCGTGGTGGGTCACTCTGCCCACGTTGTTGACCTGGGGCCAGAAGTCACGGTCATGCTGGTGATCTTCGGACACTGCCCACTCTATGGCTACATCAGCAAGGTGCAAGAGTACGACATAGCTAAGAACACCTGGAGCATTGTGAAGACCAATGGTGCTCTGGTGCAGGGGGGCTATGGCCACAGTAGCGTCTATGACCCCAAGACCAAAGCCATTTACATCCACGGAGGCTACAAGGCTTTTAGCGCAAACAAGTATGGCCTGGCCGACGACCTGTACAAGTACGAAGTGGGAACCAGGATGTGgaccatcCTGAAGGACAGTGGCTTTTTCCGGTACCTGCACACAGCCATCATCGTGAGCGGCACCATGCTGGTGTTCGGGGGGAACACCCACAACGACACGTCCATGAGCCACGGGGCCAAGTGCTTCTCCTCCGATTTCATGGCCTACGACCTGGCCTGCGACGAGTGGTCAGTCTTGCCACGCCCAGACCTGCACCATGACGTCAATCGCTTCGGACACTCTGCTGTGTACAGCAACAGtacCATGTACGTGTTTGGGGGCTTCAACAGCCTCCTGCTGAGCGATGTGCTGATGTTCACTCCCGCCAGCTGCTCGGCTTTCTCCAGCCGCCCATCTTGCACATCGGCCGGCCCAGGGATCCGCTGCATGTGGGACCTCGATCTACGGGCCTGCTTGCCCTGGGAGGCACCTAGTCCCCAGGCAGAGCGCCTCATCCTCTCACCCTGCCCTCCCAAAGCATATGCTGACAATGAGAAGTGTGACCAGTACACAGACTGCTACAGCTGCACTGCCAATACCAATGGCTGCCAGTGGTGCCCAGACCAATGCATCTCCATGAGCAGCAACTGCACGGCTGCTTTGGGCCCAATTGCGGAGTATGAGAACTGCCCCAAGGACAATCCTGAGTATGTTTGCAACAAGAAAACCAGCTGTAAGAGCTGTGCCATGGACCACAACTGCCAGTGGGAGCCCCGCAACCAGGAGTGCATTGCTCTTCCCGAAAATATCTGTGGTGAGAGCTGGCACTTGGTTGGCAACTCCTGCCTGAGGTTCACCACAGCTAAGGACAGCTATGACAATGCCAAGCTGGCCTGCAGGAACCACAACGCGGTGCTGGCCTCCCTCACCACACAGAAGAAGGTGGAGTTTGtgctgaaggagctgcagaTCATGCACGTTCTGTACAAGGCTACTGTGACGCCCTGGGTGGGGTTACGCAAGATCAACATCTCATACTGGTGCTGGGAGGACATGTCTCCCTTCACCAACACCTTCCTGCAGTGGCTACCCGGGGAGCCCAGTGACGCCGGCTTCTGTGGCTACCTGGCGGACCCCTCACCCAGTGGCTTGAAGGCGGCCACCTGTGTCAACTCCGTCAACGGCAGCCTGTGCGAGCGCCCAGCCAACCACAGTGCCAAGCAGTGCCGCACACCCTGTGCCCTCCGCCCCACCTGTACAGAGTGCACCAGCGGCAGCTCTGAGTGCATGTGGTGCAGCAACATGAAGCAGTGCGTCGACTCCAACGCCTACGTGGCCTCCTTCCCCTTTGGCCAGTGTATGGAGTGGTACACCATGAACCTCTGCCCACCCGAGAACTGTTCGGGATACCGCACGTGTGGCCAGTGTCTGGACCAGCCGGGCTGTGGATGGTGCACAGACCCCAGTAACACAGGGAGGGGGCAGTGCATTGAGGGGTCCTACCGAGGGCCCTTCCACGCCTCCACCACTGTCTCCTACCAGGAACCTGCCGTCAATCTCACCATGTGCCCCGTAGAGAACAAGTACAACTGGTCCTTCATTCACTGCCCTGCCTGCCAGTGCAACGGGCACAGTAAGTGCCTCAACGAGAGCGTGTGCGAGAAATGTGAGGACCTCACCACTGGCAAGCACTGCGAGACCTGCATCTCTGGTTACTATGGAGACCCCACCAATGGGGGCACCTGCCAGCCCTGCAAGTGCAATGGCCACGCCAGCATGTGCAATCCCCACAATGGGAAGTGTTTCTGCACAACCAAGGGCATCAAGGGAGACCGCTGTCACCTGTGTGAGGTAGAGAACCGTTACCAAGGCAACCCCCTTAAAGGCACCTGCTACTATACTCTTCTCATTGACTACCAGTTCACCTTCAGCCTGTCGCAGGAGGACGACCGCTATTACACAGCCATTAACTTTGTTGCCACGCCTGAGGAGGTGAGTCCGTCTGCCGGAGAGCTGCCGAGCCCATCAGAGTTACAGGAATAG

Function

symbol description
atrn Acts upstream of or within regulation of actomyosin structure organization. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane and plasma membrane. Is expressed in blastomere; forebrain; midbrain; and otic vesicle. Orthologous to human ATRN (attractin).

NR:

description
PREDICTED: attractin

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K24332 ATRN; attractin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015781 True 3180 mRNA 0.58 21 21157154 21224579

Neighbor

gene id symbol gene type direction distance location
AMCG00015779 NA coding upstream 104012 21046770 ~ 21053142 (+)
AMCG00015774 NA coding upstream 353300 20802997 ~ 20803854 (+)
AMCG00015775 NA coding upstream 354221 20802697 ~ 20802933 (+)
AMCG00015773 smyd5 coding upstream 382534 20760830 ~ 20774620 (+)
AMCG00015767 NA coding upstream 500627 20622793 ~ 20656527 (+)
AMCG00015782 NA coding downstream 2701 21227280 ~ 21229655 (+)
AMCG00015786 NA coding downstream 821370 22045949 ~ 22065359 (+)
AMCG00015787 NA coding downstream 878539 22103118 ~ 22146071 (+)
AMCG00015788 NA coding downstream 941652 22166231 ~ 22178257 (+)
AMCG00015795 cct7,LOC102781788 coding downstream 1436482 22661061 ~ 22664968 (+)
G100502 NA non-coding upstream 91769 21064050 ~ 21065385 (+)
G100483 NA non-coding upstream 328540 20828328 ~ 20828614 (+)
G100461 NA non-coding upstream 376687 20779346 ~ 20780467 (+)
G100349 NA non-coding upstream 829987 20324610 ~ 20327167 (+)
G100241 NA non-coding upstream 1374391 19726572 ~ 19782763 (+)
G100507 NA non-coding downstream 82027 21306606 ~ 21310605 (+)
G100568 NA non-coding downstream 589792 21814371 ~ 21814715 (+)
G100639 NA non-coding downstream 1064044 22288623 ~ 22288848 (+)
G100641 NA non-coding downstream 1221795 22446374 ~ 22449216 (+)
G100707 NA non-coding downstream 1595922 22820501 ~ 22820703 (+)
G100338 herc3 other upstream 888869 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 2385188 18744887 ~ 18771966 (+)
G100007 NA other upstream 2831250 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 4025379 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 4658623 16494692 ~ 16498531 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 1454258 22678837 ~ 22683895 (+)
G101061 NA other downstream 3640510 24865089 ~ 24865552 (+)
G101248 NA other downstream 5039336 26263915 ~ 26264308 (+)
G101275 NA other downstream 5148574 26373153 ~ 26377699 (+)
G101400 NA other downstream 6665973 27890552 ~ 27992014 (+)

Expression


Co-expression Network