AMCG00015816


Basic Information

Item Value
gene id AMCG00015816
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 23256090 ~ 23273675 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015816
CGTCTGACAGAGAAAACACTGCGCAACTGCAGCTCCCAGAACCGAGAGGACGCACCCTGTTGTAGCACCAGGCCATGTGGAACTCAGatgtccttgaagaaaacaacagtTCTTCAGAGAATGAAGAGGACATTCAGCTCGAGATCTTGGAGCTGGAGAGGGACGAGGCCCACCAGAAGCTGGCCGATATTGAGCAAGtgtCCCTGCAGATCCTGAATGAGATCAGTGCTCTGGAGATGCAGTATGAGATTGAACGCACCTGCCGGGAGAATGCAGAAGTCTTTGCTGCAAAGGTATCGAAGGAGAACAAGATGCTGAAGAGGAGGAGCCAGGCACTGCTACCGCTGATCCCAGAGCTCCCAGAGGACCTGGGGACCATCACCCTTGACCTTGACCTTGACCTCGACCCCGAGCCTGACCCTGCCACCGAATCCCTGTTGCAGTGCCAGACTCAGATCAGAGAACTGCAGGGGTCTTTGGACAAGCTGGCAGGAGATAAGATGCAGCTGTCCGGCCAGGTGGAGACACTGCAGAGGGAGCAGGCAGAACTCAGGGAGCAGCTGTCTgcagagaaggaggagaaggaatTCGTGCTTAAgaaactgaacaaacaaaaccgAGCCATGCAGAAACTCAATCGGGTGTCTCAACTAGTGTCCCATGAGCATATGGAGCTGACCCAGAAGTTGGAGCTGGAGCAGAACCTGAGGCAGCATGCAGAGATCTTTGCACACCAGATGCTGGTGAAGCAAAAGGAGGTGGCACGGCAGAGCATGATGCTCATGCCGAGCACTGAGCCAGAGCCCCAGCTCCTCCAAGCCCTGGAGCAGGTGGCAAAGGTCAGCAGCACTCTGGAGGAGATCCTGCTGCAGCGCCAGAACAAGctgCTAGGGGTGCAGTCTGCCCTAGATGAGGGCCCTGTCCTCAAGGAGCTGGAGAGAGTGAAAGCACAGTTGGAGGCGTGTGAGGAGCAGAAGAGGGAAGCAGAGAGCCAGCTCAGAGACGCCCGGTGTACAATCACTGAGCTGCAAGAGGAAGTGACCCAACTCCAGGACCGGCTGAAACAAGCAGAGGTCTCTGAGACTCCCCCTCAATCAGACCAATCACAACAAGAGGCCCCggcccctccccctctttctcttcctcctcctcctcctcctcctcctcttcctccccccccccctattGCTGTTGTCAGCCCTCTGGAGGCCCTGAAGAACAGGAAGAGGAATCAGCCACCCAACCCAGCATCAAAATCCCCGACATCTGGGCCAGATGTAAAGGCCAAGGCAGTCAGTGAGATGATGGAGAGGATTAAGAATGGGATTGTTCTGAGACCCACACAGAAGCCACACCAGTCCAGCGCGGAAGAGGACAGTGCCTGGAAGgacCAGTggaatgaaaaaagaaagagcgCAGTGAACGAGTTGCAGGGTATATTGGTCTCCATGCAGCGCCCGAGTTTGAGGAGGGTGTCCCGCCGCAGGGTCAGCCGCAAGGTGGCGCAGACAGAGCTGCTGGCCGTGctgcagaggaggaggagagtgatGGGAGATGAGCAGGATAGACCCCCCCCGACCAAAGCACAAGATCCGCAGCCCTCTGGCCCAGCAGGCCCCACCTTACCCTGGGCGAATGAGAACAGCAATGTCCCCGTCCTGCGCCGCCTCAAACACAACAGGGAGAACAGGGCCTCCCGTATCCGAGCCTCCGAGAGCGTTCTGCTTTCGGAAAGCTGACAACAGTGCCAGAGATTTACAAGAGACCGAACCATCTGAGGGGGGTCATCAGATCATCAACTCACCCCACACACTAGCAATTCCCCACAGATTCAAGGCTGATGAACCCAGTCTATTGTCTTCTGAACCCTGAGATTATTCTGCTGTTGGCTGAATACCATCAGATAATACTGTAGTGTAATTCTGCtttattggttttaaatggCACATGTTCAAACTCCTTATAACATAATGGTCTACAGCAGGGGTAGGCAACCCTGggcctggagagccacaatcctgcaggttgtGTAGGTATTTGTCAATTTTCAATTACTAAATACCTGGAACAAATGGTTATTGTGATCAGTTAAGCCAATcaccaaatacattaattaattaattgtggaTGAGGTGAGAAGGGTGAGATGTTTGTTTCCTACCAAAAATTCCACAGCTCTCCTTCAGAAATATCTTCCCCTCCAGTGGAGTCCTTGGTTAGATGAGGGTTAAATAACTTGATTCACCTTAACTTTTGTGTTACTGTTTATAGAATGGATCAAGGTAGCCATTCCCCCTGGTTTTAATCCATTGGTAATTACAGGACACATACAAACATGACAGGACTGCGGCCCTATTAAAACTGAGTTGATAATTGTGATATGACCGAGAACAGCAACAGGGCTAATAGGGGATTATTGATGCTGCTGTACTTGAGGGTCAAGCTCTTGTCAGCAGTATAGTTGTTTTTCAATTCACACCTGCGCAAGACCTTGGATAGGAAATATTAAATTGGTCCATTTATCAAATTAGAGCCTAAGTGAAATGGAAAGATTGCGGCTGTGGAGTGGgtgagctccattgtgctgtcaaaattaaatctCCACAGCTATGTGAACACGTTGACAGAAATGGCCATGTGAAACATTGTGAGAGTTTAAAAGACAGCAATACAATGTGGaacaatagattacatttttcctCTCGACAATAAaggctttttttctcttttgcacAATtgcttcagaaaaaataaagaatgaaacaaatcagtaagtcagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015816 True 2781 mRNA 0.51 17 23256090 23273675

Neighbor

gene id symbol gene type direction distance location
AMCG00015819 NA coding upstream 26842 23212680 ~ 23229248 (+)
AMCG00015815 vax2,LOC107572133,LOC107755639 coding upstream 75174 23175632 ~ 23180916 (+)
AMCG00015818 NA coding upstream 98828 23151053 ~ 23157262 (+)
AMCG00015817 NA coding upstream 110376 23135578 ~ 23145714 (+)
AMCG00015813 NA coding upstream 139307 23110272 ~ 23116783 (+)
AMCG00015814 tex261 coding downstream 2281 23275956 ~ 23281282 (+)
AMCG00015820 NA coding downstream 49484 23323159 ~ 23337368 (+)
AMCG00015827 LOC107677352,LOC107587099,LOC105028844 coding downstream 70003 23343678 ~ 23367384 (+)
AMCG00015826 NA coding downstream 94521 23368196 ~ 23392479 (+)
AMCG00015823 LOC108249661,LOC107749771,LOC105028844,LOC106611650,LOC106604646 coding downstream 139503 23413178 ~ 23453896 (+)
G100776 NA non-coding upstream 37774 23216051 ~ 23218316 (+)
G100709 NA non-coding upstream 332694 22835254 ~ 22923396 (+)
G100707 NA non-coding upstream 435387 22820501 ~ 22820703 (+)
G100641 NA non-coding upstream 806874 22446374 ~ 22449216 (+)
G100639 NA non-coding upstream 967242 22288623 ~ 22288848 (+)
G100801 NA non-coding downstream 10016 23283691 ~ 23284077 (+)
G100858 NA non-coding downstream 488616 23762291 ~ 23762523 (+)
G100863 NA non-coding downstream 566123 23839798 ~ 23961637 (+)
G100903 NA non-coding downstream 797151 24070826 ~ 24156851 (+)
G100956 NA non-coding downstream 1211154 24484829 ~ 24549300 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 572195 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 2987805 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 4484124 18744887 ~ 18771966 (+)
G100007 NA other upstream 4930186 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 6124315 17098459 ~ 17131775 (+)
G101061 NA other downstream 1591414 24865089 ~ 24865552 (+)
G101248 NA other downstream 2990240 26263915 ~ 26264308 (+)
G101275 NA other downstream 3099478 26373153 ~ 26377699 (+)
G101400 NA other downstream 4616877 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 5303825 28577500 ~ 28580829 (+)

Expression


Co-expression Network