AMCG00015824 (LOC107749771,LOC105028844,LOC106611650,LOC106604646)


Basic Information

Item Value
gene id AMCG00015824
gene name LOC107749771,LOC105028844,LOC106611650,LOC106604646
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 23460327 ~ 23471703 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015824
atgggGTTCAAAGAGATCATCCTGAAACGAGCCGCAGACCTGACGGAGGCCCTGTACAGCGTCCCACGCAACCACAACCAGCTGCCCTCACTCACCGGCTCCGCTGGCCACTCAGGAATGATGGGGGTGAACTCCTTCAGCAGCCAGCTCGCCGTCAATATCTCAGAGACTTCCCAGGGCGCCGAGCAGGGCTACTCCCGGAACTCCAACAGCGTGTCGCCCCGTGGGTACGTGCCCAGCTCCACCCCACAGCAGTCCAACTATAACACCATCACCTCCACCATGAATGGCTATGGCACTGCTGGCATGACTAACCTGGGGGTGCCCGGCTCTCCCAGCTTCCTCAACGGCTCCACTGCCAACTCCCCCTACGCAATCATGCCTTCCAGCCCTCCGTTGGGGGCTTCCTCCATCACTCTCCCCTCCAGCGTTAACTCCTCTTCCTCCAACACCCAAGCTGGCAttttctcattctctcctgTCAATATGATCTCTGCAGTCAAACAGAAGAGCGCCTTTGCCCCCGTCGTGCGGCCACAGACCTCCCCGCCCCCCACCTGCACCAGCACCAATGGGAGCAGCCTACAGGGTGAGCACCCCAGCCCTTACCTGCCTCTGGGCTCCACCCACCACTACTGGGTGTTAGTAGACGAAGACAGATAA

Function

NR:

description
PREDICTED: transcription factor COE1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015824 True 663 mRNA 0.60 4 23460327 23471703

Neighbor

gene id symbol gene type direction distance location
AMCG00015823 LOC108249661,LOC107749771,LOC105028844,LOC106611650,LOC106604646 coding upstream 6431 23413178 ~ 23453896 (+)
AMCG00015826 NA coding upstream 67848 23368196 ~ 23392479 (+)
AMCG00015827 LOC107677352,LOC107587099,LOC105028844 coding upstream 92943 23343678 ~ 23367384 (+)
AMCG00015820 NA coding upstream 122959 23323159 ~ 23337368 (+)
AMCG00015814 tex261 coding upstream 179045 23275956 ~ 23281282 (+)
AMCG00015822 NA coding downstream 241906 23713609 ~ 23733680 (+)
AMCG00015829 NA coding downstream 275727 23747430 ~ 23760626 (+)
AMCG00015830 tusc3 coding downstream 517536 23989239 ~ 23998009 (+)
AMCG00015833 micu3,LOC107562929,LOC107656542,LOC107747394,LOC102779354,LOC101479276 coding downstream 766117 24237820 ~ 24265831 (+)
AMCG00015834 NA coding downstream 818666 24290369 ~ 24306093 (+)
G100801 NA non-coding upstream 176250 23283691 ~ 23284077 (+)
G100776 NA non-coding upstream 242011 23216051 ~ 23218316 (+)
G100709 NA non-coding upstream 536931 22835254 ~ 22923396 (+)
G100707 NA non-coding upstream 639624 22820501 ~ 22820703 (+)
G100641 NA non-coding upstream 1011111 22446374 ~ 22449216 (+)
G100858 NA non-coding downstream 290588 23762291 ~ 23762523 (+)
G100863 NA non-coding downstream 368095 23839798 ~ 23961637 (+)
G100903 NA non-coding downstream 599123 24070826 ~ 24156851 (+)
G100956 NA non-coding downstream 1013126 24484829 ~ 24549300 (+)
G100962 NA non-coding downstream 1057057 24528760 ~ 24537309 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 776432 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 3192042 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 4688361 18744887 ~ 18771966 (+)
G100007 NA other upstream 5134423 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 6328552 17098459 ~ 17131775 (+)
G101061 NA other downstream 1393386 24865089 ~ 24865552 (+)
G101248 NA other downstream 2792212 26263915 ~ 26264308 (+)
G101275 NA other downstream 2901450 26373153 ~ 26377699 (+)
G101400 NA other downstream 4418849 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 5105797 28577500 ~ 28580829 (+)

Expression


Co-expression Network