AMCG00015836


Basic Information

Item Value
gene id AMCG00015836
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 24442637 ~ 24452889 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015836
GAGTATTACTATAAAAAGGAAGTGAGCTGCAAGTTgagatttctgtgtttttcagattttcttcaCAATGTAACACTTTGCCTCCTTGGTGCTCCTTGCTGCAGGACTGCACTCCACGCTCTGGGCCTGAGGGACTGTATCCTGCCTTGCTTTGGCATTTTTATCAGCACCTAAACTCCCAGAGCACACtttcacccccccacctcctcacCATGAAGGTCTGGATCCTTATTAGCCTGATTCTGCTTTGTGAAGTACTTCAAAATGGCCTCTGTCAGGAGAAACGCAAGAAAGACGCCGGGGAGAATCGAATTCGGCCTGGCACGAAAAGGGTAAAGGTCAGGTTTCCCAAGGTGAAGGAGAGGGAAGCAGGCGTTAAGGGTCAATCAATTTTGACGCAGGTCTTGGATAAGGGACGCTTCCTTAGGCTGCTCGATTCCTTGACTCTCAGCTCAGGGAAGAGTCTTGAGCTGCGATGCAAAGGCAGCAGGATCGGATGGGCTTATCCCACTTACCTGGACACCTACAAGGACTCACGCCTCAGCATTAAACAGCACGACAAGTACAGCCAGCTGATCCTCACGCCGTCTTCCGCGGCCGACACTGGCGAGTTCAGCTGCTGGCCACAGCTCTGCGATGGCACCGAATGCACCAAAGACCCTGACAGGATCTCCGCCACGTACATCTACTTTACAGATAAGGACGAGCTGTTTGTCCCATCAGCATTGCATTTTGAGATCATCTATCTGCGACCGGACAAGCCTTCAATCATCCCCTGTCGTGTTACCAACCCCTCAACCAAAGTGTCGCTGCACCGGGAGGTCCCCCCCGAGGAAGTCCTTGTAGATGGAGTCCAGATATCATACAACCCGATGAAGGGCTTCATCCTTCATCAAGCCAGCCCGGAGCAGAAAGGAGTTTACTACTGCAAGGCTGTCAGCCGGGATACACCACAGATGTCCATCAAATTCCAGCTACTGTATGTGGAAGtgcCAAGTGGCCCCCCCTTTGTGACAATTGAAGCATCTGAGACTACAGTACGAGGGGGTGACAATATTAACGTAACGTGCACCGTTCTTGGAGAACCTGAAGTGGATGTGGACTTTGTTTGGACTTTCCCAGGACAGGATCAAAGACCTGTAACCATTACAGAAACCTGGAGATTAATACACAGAGGCACTGGACACACAACTCGTATTTCACAGAGCATGATCATTGTGGAGGATATTGAGACTATTGACTTTGGAAACTACATCTGCACTGCCAAGAACCTATATGGGGAGACCTCTGTGGCTGCAAACATTGCCTCTTATTTCTAAAGATCACAAGGAAAATGATAGTGGTGTGGTTCCTTctttgtctgtatatatatatatatatatatatataaaacaaattgatgTTATACTCCTTCCAGTTTGCTTTACAATTAATTCAATACAATATGTAATGCCTTTGacatattcattaaaatgctttgaaatgttgtCTAGAAGGGAAAGCAATTGTAAGACTTGCTGGTACAAGTGAGACAAAGCAGAATATGAATGGATCTGATGAATTGTCATCATcatgaaaatataatcttaattattcaaataaaaaattggaAAGTAAATCTGCAGCCATTCACCCCATTAGCTACTTCCGGAGAATTACTTAATCGGAGTTTGTAGTTTCCAGTATTGCAAATTCCCTTTCACCGACTCTCTGACTAAAAGACTGGGGTAGAATAGCTGCACAGGCATGCCAGATTTTGGCAAGGGTGGACACAACACATAGTTCATGGCTGAGCTGTGTAAGAAGTGTGCCTAGTCTTAATTGACTCCTTATGTGGAAAGTATGCAGAGGCCTTACTTTGTTTCATATCAAAagacttactgtatttttcctATACTTTCAAAAGCACAATTCCTTGCTTGCTTCTCTGGTTCTCCAGGATCCTGTTGAAACTATTTTGGTGAAATGATTTctagtacagtgtgtgtatcatATTTGAATCTCACTTGGTTtgttattaaattcattaaataaaatataactgaCATCGTTACTTGGCTCCTTTGTTTGAGGTAATTTGTTAAACATTGGAAGTGTGGAAGCTtttccatacagaaatggttatTCAGCAAAGGAAACTGCCTCGTCTGTGTAATACTAGGAGTGAGTGTGAAAATGGATAACGCAGATTGGTattcagtgctttatttttcaaacaaaacattggataacatttacaaaagtgACATCTTATTTGAAATGCCTcctgacataaatacatttgcaattaattgattctgagaattaaaaaatcatCAAACATATTCCATGTGGTGTCAAGTGCAGAAGTGTTAGACATTAGTGGAAATGTCAGTGGGTAGAAATCAGGGACACACTTCACACAACAATCATGCCACAGTCACTGTTCCCCGTCAGATAAGCTCGTGTCCCTTCAACCTGGTCAGTGCAGTCAGCCAGATGCATGATGGGAGAACATTCTACCTACACATATTTCAATCCTACACATCGTAGGTGCATACTGTATGTTAGTGAGCTACGCTACTGCTCTTTAGTAATTACAACTTAATAATCATTTTGGTTATGAAAAACTGCACTATTTATATTGGTATGCAAGTTTAACCCACTGACCTATAGCTTCCTGTCAAATATCACCAAGCTATAGACCAAGAGACTTACGTTACAGTTATGTGAACGAACGTTTTCAGCATGTCTTGCAAGTCTTATGAaggaacaacaataaaaaaaacaccaagtaGTGAAGTATGTATGTGCAGCATCTTTAGGATGTATTTTATACACCTTTAATTGCACttgattaatttacaatttCTTATAAGGTCATTTACAGctcactttaaatatttaaaagctatttaaaagCTTTGCCCTTCTGAACAACCACAAATACATGGCAGGACAATATAGCTCAAGAtctgagaaacagaaacaaggaAAAACATGTATACTGTGATTTGtatgtggcttttttttttatacggAAAATATTGCATGTGGCTTAAAATGTAAgtgaaacaataaaatcaagaaTACCTTTGGGTTTCTTATTGGAGTTTCTCAATTTTTTACATGGTAAACACATGgtttacttaaattaaaaggGTTGTAAAATGCAATGGAACAAATCCTGTCTTTAATCACATGCAGCAATTGAGGCCTTCTTAATGGATGATTAACTactatttttccattttccccAGGAATGTATTTTATCCGAGTGAtcagagatttttttaattttttaaatttttaatcaAAGTAGGTGTATTAGAGAATTCCAAGTAGATATGAGTGAGCTATGGACTAATGAAAAGTACAACAATTTTACCAAGTCGTATTCCAGATTGGAATAGTGTATGTTTTCAGCAGATTAAATCTTTTTAGTAAATTTTTTAATCATAGTTCTGGTTAAAAGttaaattttgaaaacaacatgcAAAATGACTCTTCCCTCTGGGAGCCAATTGTGCAGTGGCAACTTTGCAAGCCTGGAACTAAATTGAAGAATTAAAGTTTCCTTTGGCAGATGATATGTCCGCTTTTCAAttagtattcatattttatcagattaaaaacaatacgtatgttttgttactaatGAAGCCTGAATagaataaaatgacaaacactAATTTCCagcatggaaaataaaatatgaatccgTGTGGTTCAAAAAGGCAAATGTGCATCTAACTTCACTTTACATGTCtctatacatcaataaataaagccaaAGTCTCCATAACCACAATGAACAAGGAAACAACAATAGCCAATATGAATAGAACTGGGAATGTTGAAAGGAAGTAATGccaaaatgtcacaaaatgtcATTGTATCATTTCATCATCATAACAAACAAGCACTTAGACTAGGACCTGAACCaaatcaaaattgtaatacacaACTGAATTACAGAAATTGGCATGTAGGTAATAGGTAATTCAGTGAAAACTTAAGATACAGACTTAAAACTTTTTGTTCTCATTATACACTGGCACTGCACAGAGAAAAAACTTCGCTGTAATGTCTGCCATTTTGTTAAGCTTTGGCTGCACGATGACAAAGTCATATTGGTTCTTGTACAGGGTAGAatcatttgcatgttttgtttttccacccaGTTTTTTACTTCTGGCTAAACCTGTAAATATATAAGTGTCAGCTTTTCTGGTTTTACTTTACTTTGTGAATTCAAATGTTTGGAGCTTGTAAAATATGCTCATTTCCATCAGTAGAATTTGAAACTAGAGATTTCAACATTACAACTGAAGCTGTTTCGTTAACGTTTGTATATGCAACTGAATTGagatattatacatatatgagagtgagagagaaagagatttaaaaacacaaaaatcagacaaaatataacatttcagaGTTCAGATTCCCTGCACTAACATGATACAGGTGCACATATATATGCTCTTTCAGCATTAAAATGACATACGTAGCATACTTGTGAGTAACCTTAAAATACTGAAAGTGGTTATCTACCGATTATTAAAATTTGTGTATTTAGAAAAACTAAGATGTAATGGTATGAGCACGGAAATGTATTTCCTgcacaaaaatctaaaattaactgcaattttttttttttaataaaattagattttttcttcagtaaaaCTATGTTAAATATAAAGAGACTACGTCTACAAAATGGAAGCTGGACTGCCCTGTAGACAGTCGTTTATCCCGTGGCCTGGgaatttacagttttattttacaattggaacgcatgttaaaatgaaactaataaattaaatcatacaaaaatataagcacaattttggaatatttatatatatatttatatgactttattaattgcatattttgaaC

Function

GO:

id name namespace
GO:0042802 identical protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015836 True 4893 mRNA 0.37 6 24442637 24452889

Neighbor

gene id symbol gene type direction distance location
AMCG00015837 NA coding upstream 2804 24415124 ~ 24439833 (+)
AMCG00015835 LOC107554395,LOC105892576,LOC104947301 coding upstream 89219 24345624 ~ 24353418 (+)
AMCG00015834 NA coding upstream 136544 24290369 ~ 24306093 (+)
AMCG00015833 micu3,LOC107562929,LOC107656542,LOC107747394,LOC102779354,LOC101479276 coding upstream 176806 24237820 ~ 24265831 (+)
AMCG00015830 tusc3 coding upstream 444628 23989239 ~ 23998009 (+)
AMCG00015842 NA coding downstream 106236 24559125 ~ 24594041 (+)
AMCG00015846 NA coding downstream 881127 25334016 ~ 25337276 (+)
AMCG00015845 NA coding downstream 921026 25373915 ~ 25405589 (+)
AMCG00015847 sorbs2,LOC107707214 coding downstream 1500470 25953359 ~ 25997861 (+)
AMCG00015849 pdlim3,LOC108268957 coding downstream 1565802 26018691 ~ 26030507 (+)
G100903 NA non-coding upstream 285786 24070826 ~ 24156851 (+)
G100863 NA non-coding upstream 481000 23839798 ~ 23961637 (+)
G100858 NA non-coding upstream 680114 23762291 ~ 23762523 (+)
G100801 NA non-coding upstream 1158560 23283691 ~ 23284077 (+)
G100776 NA non-coding upstream 1224321 23216051 ~ 23218316 (+)
G100956 NA non-coding downstream 31940 24484829 ~ 24549300 (+)
G100962 NA non-coding downstream 75871 24528760 ~ 24537309 (+)
G100998 asah1,LOC102779657 non-coding downstream 143585 24596474 ~ 24597817 (+)
G101029 frg1,LOC107721419,LOC107702291,LOC107554393,LOC107656998,LOC107747397,LOC102296826 non-coding downstream 150413 24603302 ~ 24608554 (+)
G101069 NA non-coding downstream 657909 25110798 ~ 25111058 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 1758742 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 4174352 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 5670671 18744887 ~ 18771966 (+)
G100007 NA other upstream 6116733 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 7310862 17098459 ~ 17131775 (+)
G101061 NA other downstream 412200 24865089 ~ 24865552 (+)
G101248 NA other downstream 1811026 26263915 ~ 26264308 (+)
G101275 NA other downstream 1920264 26373153 ~ 26377699 (+)
G101400 NA other downstream 3437663 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 4124611 28577500 ~ 28580829 (+)

Expression


Co-expression Network