AMCG00015837


Basic Information

Item Value
gene id AMCG00015837
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 24415124 ~ 24439833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015837
TGTCAGTTGGCTAACCATTTATCAGTGGTCAGTAAGCACTTCATCTGCTGGGTCTGCATCGTCTGTGTGTGCATTAGAAATCTGCCGAAATGTGAGGTTCCATTTTCTGAGGTTTGCTTTCCTTCTGCGAGATGAGGAGTAACAGAAGACCAAGCCTTTCTGGCACGACATTGCCTCCCACTGACAAGAGAGAGAGCCAGGATATTCAAATCACTCTTCCCTGCCAGTTCTGCAGCTGTGAAGCCGTATTGGTCAATGTCTTGCACAGCCAGAGGCCAGGGGTATAATATATTAAGACAAAAGAGAGCTGGATAGAATGaagggagaaataaaaatagctcCTCGTGGGTGCAGCATGTCAGTTATGGGCATTTGAACTGAGCTGAAGTattgaaaatgaacatttatttactaatttatttttgtagactGTTATTTGCAAAATAGCCACGCTTTTTGTGTAGCTTGTCCGTTTTGCTTATATTTCCACTGTCAGAAATATTCACACACGTGTATTtaccattttttcttttttgatgaGTCAACTTAAGTGAAGTCAAGATGTTGCATCATGTGCTGTCGTTTTCCCGAAGCCTGATTCGGAGGAAGATAGTGGACATGGACTCCGAGGACTCCAAGCTGTGCCGTTGCCTGTCCACTGTGGACCTCATTGCCTTGGGAGTGGGCAGCACGCTGGGAGCAGGTGTCTATGTGTTGGCTGGAGAAGTGGCCAAAGGAAACTCTGGGCCCAGCATCGTCGTTTCTTTCCTGATTGCTGCACTGGCATCGGTCATGGCAGGGCTATGCTATGCCGAGTTTGGTGCCCGTGTACCAAAGACTGGTTCTGCCTACCTCTACAGTTATGTAACTGTTGGTGAATTGTGGGCATTCATCACAGGATGGAATCTAATCTTGTCTTATGTAATAGGAACCTCCAGTGTGGCACGGGCTTGGAGTGGCACTTTTGATGAGCTTCTAGGGAAACGGATCGGACATTTCTTCATCACATACTTTCCAATGAACTCCCCTGGATTGGCTGAGTACCCAGACTTCTTTGCAGTATGCCTTATACTGTTACTGGCAGGGCTTCTTTCGTTTGGAGTGAAGGAGTCTGCCTGGGTCAACAAAGTGTTCACAGCTGTCAATGTGCTGGTGCTTGTGTTTGTCATCATTGCTGGCTTTGTGAAAGGTGATACAGAGAACTGGAAGATAAAAGAAGAAGTTCTTGTTAATTTCACTGCGTTGACGAGAAACCTGTCTCTAACCAGTAACATTACCAGTGATTTTGGTGTTGGGGGTTTTATGCCCTATGGAGTCGGAGGCACCCTAGCAGGAGCCGCCACCTGCTTCTATGCATTTGTTGGTTTTGACTGTATTGCAACGACAGGTGAAGAGGTAAAGAATCCACAGAAGGCCATCCCGTTAGGAATTGTTGTCTCCTTGTTGGTTTGCTTCCTGGCGTACTTTGGTGTCTCGGCAGCTCTGACTCTCATGATGCCGTACTACCTTCTGGATGAGAAGAGCCCACTACCTGTGGCTTTTCAATACGTGGGCTGGGGCCCAGCCAAGTTTGTGGTGGCAGTAGGATCCCTGTGTGCTTTGTCGACTAGTCTGCTTGGCTCCATTTTCCCAATGCCTCGTGTAATCTATGCTATGGCAGAGGACGGGGTGCTTTTCAAAGTGTTAGCCCGAATCAATCCTAAGACGAAGACTCCAGTTATTGCAACAATGACCTCCGGTGTCGTTGCAGTGAGTAAGCGTCAGACCCCAGTGGCTGCCACAATGGCAGCAGGTGTCACTGCTGCTATTATGGCCTTTCTGTTTGACTTGAAAGCCTTGGTTGACATGATGTCAATTGGGACTCTTTTGGCTTACTCTTTAGTGGCAGCTTGTGTTCTGATTCTCAGGTATCAGCCTCATGCAGCTTATGAAAGACCAAAATTTAAcatagagaaagaaaaactgactgCTGAAGAAGGAGAATCGGAAATGACTGAGTCGGAATCACAACTCAACATGCTGAAAGATGGAGCTGTAGTCGTGTGCATCATCAGTGCACTCACCACATATAAAGTACATGCTATCCTGGCCATGGAGTCGTGGATCTTGGGCGTGCTGGCTGTGTGCCTGATGATATTCATCGTCTGTGTCCTCATTGTTCTGAGGCAGCCTCAGACTCGGAAAAAAGTTGCTTTCATGgtTCCACTCCTTCCTTTCCTTCCCATTCTTAGTATATTTGTCAATGTTTACCTCATGGTACAACTAAGTGGTGACACCTGGATTCGGTTTTCAATCTGGATGGCTGTCGGTTTTGTGATCTACTTTGGCTATGGGATCAGGCACAGCGTGGAAAGTAAACGGCATGAGGACGATGAGGATTCGGTCGAGAGTGAAGCTTTGAATAAAAAGAGGCCCAACAGGGATGAAGATGTAGACCTTGATGATGAAAATGACCAATTTATCATCCAAGAAAAAACAAGCGAATGCTAGGCGTGAGAAGACACCCGGCAACTCCTGCAAATGTGTCCTCTGCAGCTGACCTGCAGACAACCTGACATATCAGTGTTAAAATGTGCCATGCAGacttttaagaaaaatactAGTTTTCTATGTTTGTAGTGTGTCTGTTTATAACTAAGTAGGGCAATCATTTCCCTCAGGTCACTGATCTGGGgctgacacaacaaaataagaaaaaaaagtgttatggtcTTGAAAGGTCcaacacaattttatttttaaaaagactaAAGCAATACGCTTTGTAAAGATGTGGTCACAATGGCTTAGGCCTCTACTGTAACTTTGTTAATTATCTTGATTGAAAGTGTGATTGCTCTCAAACGCTCCACACATGCTCTGGGATAGGTTCATTTCCAGTGATTGGCCATTGCGTAATTGTATTGGCGTGACTCCCTATCTTTGTGTTGTATAGGAGGCGGTAGGTGTGGCATCCTCatctataaaaaacacattaaaaaagccCCAGGGGAATAGTGTTGTATGGAGTAGAAGGTATGGTTTCTCATAACACTATCAGCTGTGACTTAATTCTTAATTCCCAACATATTTATGCCCCACACGATGGCAGACtgaatttgaatgaaataataGCTGGACTAATCATGGTGTGGGTTTTGCTCCTCTACTGTACTCCTTGCTGTGGAAACAGAACAGCAGTACACAAGAAACATAGTATTAAAACTGTATTGTTTAATGGTGGAAGTCAATCATATTCTTCTCTGAAGGGTGTGCACAGCTGCACCTGTTTGACCACACCGGCAGCTTTGTCTGTTGTTCTTCACGCTGACCTCTGCCTTTGTCTCGGATGCACGTGAATGGTCAATGTCAAGGCAGTGCATCTCTTGAAGTGGATAATCACCGAGGTAACTGCCAGATGCAGAATACCCAGTGCCTTAAATATTTTCTGCCGGCTTCTTCCGGTGTGTCCTTGGCAAACTAAGTGCTTCCTTTGAAAAGCCCTTCAGTCCTTATgaactgtgtctctgtgcgttTGCTCTCTGCAGACTATGATTTGTTCATGTGGCTGGCGGTCTGCTTAAAATTCAGCTACAGACTCTAAATAATCCTGCAGTTTTTACATAAAAATTGTagtatagtttaatataatatatagtatatttaacATATAGTCTAACATAACTCTAGTTTCACACAGGAACAGAACATTATCACCTATccaatttcctttattttattttatttggtagGTGTACAAATCCCCTTTATTTTcagaatgtaaaaatgtatattttaattaaaggggAATTTGCAAATTCAACTTTGGTTATAGTTGCCATATGATGCATTTTCAGCCACAACCTTTTCTGGATGACAAATAATAGGTGATTGTCCCATATGTACAACATCCAGTCTCctgtaaatgaattaatatttgtaaGTAGGTTATCATTATTTGGCATCTTGTTTACTCGTTTACAAAAATGCAAGTATTGAAACTGcaagttgctgtttttttgtttgttttttagtcaTACGATGcttcatctttttttaattacaactgGGTTATCAATTTGTGAATACATATTTCtgtatagaaatatatgtaaagaaatcttaaatactttgtttttattgaatacattacCTGTACTAGGAAGTCATTATCATTTACCATTCCCAGTTATGAAATGGATACACAGAAAAATAGGAATATATTAATGTCACTGTACTAAATGTGTCACATCCTTATTAGGAACATAAAAGTTAAATGGGTAATTAATGTATTCCTGTAATTGTATTGTCCTTATAATAGCAGGCTTTCATGATACAAGCATGTAAACAACATGGTCTGTTTTGTGTATTGTACCATTGTATCCCAACTGAGCTTTCCTTGGCTCAGGAGACTCCACAGTGATTTGGCAACACTGTCAGTAGTTTTGCCCTTTGGAAAAGTACACATAGACACTAATGATAGTTTACTTTGGAGATTACCTCAATCCCTTAGAAAAAAATAGATTCTATCATCTCTAATAGTAAAGTAATATACACGCAAGTTAAACTGACAgatttcatataattttgtattggtgttaaaaacaacaaaacctttGTACATAAATACAAGGTGAGCTATAATTATACAGTTAATGTTAATGTCATTATCATTTGTATACAGTCAAGAATGTAACACGTTTTATACAGGGAGACCCTTTCAACCTGTCCACAAGAAAAAGTCACTTATGACACGGTGTGCTATTGGGATTTTACTAACTTATTTCATTGATAGATTGATGTCAGTAagctgaatgtatttttcaatgttcTCGTTGCAGTGGTCATCTGTGTACTAGGTATTGCTGCTAACTAAATTAACACATGCTGTGATATTTCATccatataattttaaatatgacaaCTGCAATAAAATATGTGGGGGAAACAAA

Function

GO:

id name namespace
GO:0003333 amino acid transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function

KEGG:

id description
K13864 SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015837 True 4931 mRNA 0.41 13 24415124 24439833

Neighbor

gene id symbol gene type direction distance location
AMCG00015835 LOC107554395,LOC105892576,LOC104947301 coding upstream 61706 24345624 ~ 24353418 (+)
AMCG00015834 NA coding upstream 109031 24290369 ~ 24306093 (+)
AMCG00015833 micu3,LOC107562929,LOC107656542,LOC107747394,LOC102779354,LOC101479276 coding upstream 149293 24237820 ~ 24265831 (+)
AMCG00015830 tusc3 coding upstream 417115 23989239 ~ 23998009 (+)
AMCG00015829 NA coding upstream 654498 23747430 ~ 23760626 (+)
AMCG00015836 NA coding downstream 2804 24442637 ~ 24452889 (+)
AMCG00015842 NA coding downstream 119292 24559125 ~ 24594041 (+)
AMCG00015846 NA coding downstream 894183 25334016 ~ 25337276 (+)
AMCG00015845 NA coding downstream 934082 25373915 ~ 25405589 (+)
AMCG00015847 sorbs2,LOC107707214 coding downstream 1513526 25953359 ~ 25997861 (+)
G100903 NA non-coding upstream 258273 24070826 ~ 24156851 (+)
G100863 NA non-coding upstream 453487 23839798 ~ 23961637 (+)
G100858 NA non-coding upstream 652601 23762291 ~ 23762523 (+)
G100801 NA non-coding upstream 1131047 23283691 ~ 23284077 (+)
G100776 NA non-coding upstream 1196808 23216051 ~ 23218316 (+)
G100956 NA non-coding downstream 44996 24484829 ~ 24549300 (+)
G100962 NA non-coding downstream 88927 24528760 ~ 24537309 (+)
G100998 asah1,LOC102779657 non-coding downstream 156641 24596474 ~ 24597817 (+)
G101029 frg1,LOC107721419,LOC107702291,LOC107554393,LOC107656998,LOC107747397,LOC102296826 non-coding downstream 163469 24603302 ~ 24608554 (+)
G101069 NA non-coding downstream 670965 25110798 ~ 25111058 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 1731229 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 4146839 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 5643158 18744887 ~ 18771966 (+)
G100007 NA other upstream 6089220 18320056 ~ 18325904 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 7283349 17098459 ~ 17131775 (+)
G101061 NA other downstream 425256 24865089 ~ 24865552 (+)
G101248 NA other downstream 1824082 26263915 ~ 26264308 (+)
G101275 NA other downstream 1933320 26373153 ~ 26377699 (+)
G101400 NA other downstream 3450719 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 4137667 28577500 ~ 28580829 (+)

Expression


Co-expression Network