AMCG00015854


Basic Information

Item Value
gene id AMCG00015854
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26120808 ~ 26129334 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015854
ATGTACAGCCCCAAAGACTTAGAGGGAGAAGTGGACCACGCTTTCTTTGACAGTGATTTTGAAGACGGCGGCCAGGACAGGGGTGGTGTTAGTGGAAATATTCATGAGGAAAAGCCCTTGGAGGCCCGAGGGAAAAGCAATGGAGGgtcagcacagagcagagagagctccttagaggaggagagggagaagggcaGCAGTTCGCTCAAAGAGGACCTGAGTCGCCCTTCGAGTGCCTCCTCTTCACTTTCTTATGGGGCCAGATCCGAGGTCAGCAGCAGTGGCAAACTGGAAGGTGCTTCTGGCCGCCATTTAATCATCCCCCACAGAATCCCCACTGGCTCCTCCACCGAGGAGAGGGAATACGAGGACGACGATGAGGAGGCGGACGAAGAAGACAGCTATAATCGCAGCGAAGACGAGAGCGAGGCAGAGCGCGAGGAGAAGCACGCCAGATGTCGATCGGCCCACCCTGGCAGCAGTGTGAAAAAAGCCTGTACTAAGTTCAGGACCCACAGCCCTCCTTCCCCCTCGGAGTCGGAGAGCTCCAGCAGCGATGCAGGGAGCTGTGTCCCGGAGCTGTCCCCCCAGAGGAAGCCGATGGGCCTGCTCTCCGTGTCATCCCCGCGGCACCGACCCCGATATGGGCTGGCAGCCAGGAAGCAGAGACTACGGCTCCCAGACGAATCGGAAGACACAGTCACCGATGTGTCTCCCTTGTCCACTCCAGACATCAGCCCCATCCAGTCCTTCGATCTAGCCTTAGTGAAGGACAGCCTGAAGAAGAGAGCCATGAGGAAGCAGGAGAACGTCAGTGTGGACCTCTCCAGGGAAGCTCCAGATTGGTGCCCTGACCAAGAAGGTGAGAAGAGCCCCCCAAAGACGGGCAAAACCAGATCTGAAATGTGCCACATGAGCTATACATCCTCAGAGTCTGTAGAGTCTGAGATTGGTGGTAGGCATGGCCAAAAGGTCTTAAATGATGCCTTGGATCTTAATCAGCTTCTCAAAGCTTTTATGAGCCTAgagaagaagacccaggagagCCTGGTGATTGATTCTCCCGGAGGAAAAGCGAGGAAGAATTTTTCGTTCAGCAACGAGGAGGTGAGGTGCATCGACAGGGAGAACCAGAGGTTACTGAGAGAGCTGTCCAGACAGGCTCCCAAACCCAGGATAAAAAGTGCCACCGCGAGAAAGCCCACTGGCTCTCCGGTCAAGCTCTACCACACCGCACTCAATCGGCAGCGAGAGCAGCAGAGGATCGAGAGAGAAAACATGGCTTTTCTGAAAAGACTGGAGTCTGTGAAGCCCACGGTGGGCATGAAGAGATCCGAGCAGCTGGCAGACTACCAGCGACAGGCCCAGTTCAATGGCTCTGCAGCTCCCTCCAGACTCGACAGACTGTCCGCCAGCAGGGGGGGCTCGACAGCCGTTGTGTCCAGCACCGCTGTCCCCAAGCCCAGAGTCACTGAACCCAGAACGGCCTGGTCCTGA

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015854 True 1497 mRNA 0.56 4 26120808 26129334

Neighbor

gene id symbol gene type direction distance location
AMCG00015853 NA coding upstream 59723 26056102 ~ 26061085 (+)
AMCG00015848 LOC107579280 coding upstream 65399 26046106 ~ 26055409 (+)
AMCG00015850 NA coding upstream 80139 26038348 ~ 26040669 (+)
AMCG00015849 pdlim3,LOC108268957 coding upstream 90301 26018691 ~ 26030507 (+)
AMCG00015847 sorbs2,LOC107707214 coding upstream 122947 25953359 ~ 25997861 (+)
AMCG00015852 NA coding downstream 8775 26138109 ~ 26150323 (+)
AMCG00015851 NA coding downstream 33900 26163234 ~ 26168850 (+)
AMCG00015866 NA coding downstream 67330 26196664 ~ 26224181 (+)
AMCG00015873 NA coding downstream 98352 26227686 ~ 26234075 (+)
AMCG00015869 NA coding downstream 112797 26242131 ~ 26253246 (+)
G101116 NA non-coding upstream 395230 25667828 ~ 25725578 (+)
G101107 NA non-coding upstream 624889 25420890 ~ 25495919 (+)
G101088 NA non-coding upstream 711159 25408665 ~ 25409649 (+)
G101087 LOC107575789 non-coding upstream 712272 25388061 ~ 25408536 (+)
G101069 NA non-coding upstream 1009750 25110798 ~ 25111058 (+)
G101270 NA non-coding downstream 234961 26364295 ~ 26365059 (+)
G101271 NA non-coding downstream 238263 26367597 ~ 26367905 (+)
G101272 NA non-coding downstream 240151 26369485 ~ 26369703 (+)
G101273 NA non-coding downstream 240758 26370092 ~ 26370326 (+)
G101282 NA non-coding downstream 345726 26475060 ~ 26475349 (+)
G101061 NA other upstream 1255256 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 3436913 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 5852523 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 7348842 18744887 ~ 18771966 (+)
G100007 NA other upstream 7794904 18320056 ~ 18325904 (+)
G101248 NA other downstream 134581 26263915 ~ 26264308 (+)
G101275 NA other downstream 243819 26373153 ~ 26377699 (+)
G101400 NA other downstream 1761218 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 2448166 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 3494711 29624045 ~ 29652938 (+)

Expression


Co-expression Network