AMCG00015869


Basic Information

Item Value
gene id AMCG00015869
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26242131 ~ 26253246 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015869
TGGGAAAAGACGTTTGTGTGGTATAAGCAATATATTCAATGACATGTATACATTAATAGCAAGCCAAACCCATGCTGAAAGATGCACAGATGCGCAGATGCACTCACAGCCCAGCTCAGCCATGGCGCAGGAGTTGCAGCTGCTGTGTTTCGGTTTGCGTCATCTGGCGTGGTGACGTCAAGGCGCAGGGCAGGACTCTGGCGTAAACAAGCCTTTGAGCATCGTGTGGACGACGGTCTTTTGTTTCACATGAGGGGGAGTTTACTCACAGGCTGGGCTTGTACAAGTGAGCTGAAAAACACAGCAGCTCGACACGTCTGAACGGAGCAGCGTCGTAATATAATGTCAGACGTTACGGACGCCAAAAAGGTGGCTGGCTCAGGTGGGGATGCTGCGGATGCTAAGCCTGTTAACAACCAAGGATCAAATCAACAATCCAGTGATGGAGCGTTGCAAATGGATGCAAAACCACATGGGTCACATTCCTATAGATACAGCATGAACTATCCAAGCATCGGCCAGTGCATCATcattaacaacaaaaactttGACAAGAAGACGGGGATGAATATCCGCAATGGAACTGATGTGGATGCTGGGAATATGATGAAAGCGTTTAAAAAGCTGGGCTATAAGACAACGGTTTACAATGACCAGACATGTGACCAGATTTCAAAGACCTTGAAGAAAGTTGCCAGCGATGACCACAGCAACGCAGCGTCCTTCGTGTGTGTGCTGCTGAGCCACGGGGATGAGGGGGTGCTGTTCGGCACAGACGGCAGCATGCCCTTAAAGGGGCTAACCGGCTACTTCAGGGGAGACCACTGCAAGACGCTGGTCGGCAAACCCAAGCTCTTCTTCATCCAGGCCTGCAGAGGCACTGGACTGGATGCAGGGATTGAGGCCGACAGTTCAGACGCTGGCTCAACGGAGAGGATCCCAGTGGAGGCGGACTTCTTGTACGCGTACTCTACAGCCCCAGGTTACTACTCCTGGAGAAACACAATGAACGGCTCCTGGTTCATTCAGTCCCTGGTGGAGATGCTGGAGAAGTACCACAAGGAGCTGGAGCTCATGCACATCCTGACGAGGGTCAACCACAAGGTGGCACTGGAATTCGAGTCGGCCTCCAACATCCCCGGCTATGATGCGAAGAAGCAGATCCCTTCCATCGTTTCCATGTTGACCAAGGAACTGTACTTTTCCCACTGATGatgaattaaaacaagattaagAAAGGGAAGCTGACTGGGTCCATTAAGCTTTAGGGTtctgtttttaagcatttttttaattgtagctGGTTAATAGTGATGGTCAAGGTGCAATGAAGATAAGACCGAAGAGTCTGTTGACACCTGGAGTGTTATGCAGTTTTCAGCAGGACTGCGTTTCCGTTTATAATTGACGTGTTTGTGATGTTTATATCTTTCTGCTTTTTCAGTCGTGCCACTGGCCTTTGTATTGGGAGACATTTGAGAAccttttctgaatgtattttgtagcaCATCATTCTTATACGTTCTCTGTTTTATATCCCATCATCTTTCTAACGATTTTGTACAGGACAGGGGCGTAGCTAATCTCCTTTCTACAGTGCAGCTAGAACTTCCATTCAAGTGACTGAAAAGTGTGTCATTCGATTTCTTAATCTAAGACAATAGACACAATTTTATGCATTAGCAGgatatgcatttgaaaaaagctGTCTTGATGGCAGCCGAGTTCCTGTTATATACACCTGGTCAGGGAGGAATAATCCTGTTGTCGATGGCCTTGATTCAAAGTGCTTTTTATATTGTACCAGCGAAAGGATAATAATGAGCTAATGTGATGGTACAGATCATACAGAGGTGTTCAGGGAAAGGCAGTTGTGGAAATTCCATCCTTTGGGTCATGAACAAGGGATCATTTTGTGCCACTCTCAACTGAATTAAAGctgtacacaaataaacaccTTTACAATCTCGAGCTGTTTTGAAAAAGCCAGTTCACCAAACATGGCATGTAATCgtaggtgttttgttttttaaataaaagaactTTGACTTTCA

Function

GO: NA

KEGG:

id description
K02187 CASP3; caspase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015869 True 2054 mRNA 0.46 7 26242131 26253246

Neighbor

gene id symbol gene type direction distance location
AMCG00015873 NA coding upstream 8056 26227686 ~ 26234075 (+)
AMCG00015866 NA coding upstream 17950 26196664 ~ 26224181 (+)
AMCG00015851 NA coding upstream 73281 26163234 ~ 26168850 (+)
AMCG00015852 NA coding upstream 91808 26138109 ~ 26150323 (+)
AMCG00015854 NA coding upstream 112797 26120808 ~ 26129334 (+)
AMCG00015868 NA coding downstream 1667 26254913 ~ 26261489 (+)
AMCG00015870 NA coding downstream 17145 26270391 ~ 26305794 (+)
AMCG00015872 NA coding downstream 53381 26306627 ~ 26308732 (+)
AMCG00015867 NA coding downstream 80236 26333482 ~ 26356094 (+)
AMCG00015875 NA coding downstream 267944 26521190 ~ 26525630 (+)
G101116 NA non-coding upstream 516553 25667828 ~ 25725578 (+)
G101107 NA non-coding upstream 746212 25420890 ~ 25495919 (+)
G101088 NA non-coding upstream 832482 25408665 ~ 25409649 (+)
G101087 LOC107575789 non-coding upstream 833595 25388061 ~ 25408536 (+)
G101069 NA non-coding upstream 1131073 25110798 ~ 25111058 (+)
G101270 NA non-coding downstream 111049 26364295 ~ 26365059 (+)
G101271 NA non-coding downstream 114351 26367597 ~ 26367905 (+)
G101272 NA non-coding downstream 116239 26369485 ~ 26369703 (+)
G101273 NA non-coding downstream 116846 26370092 ~ 26370326 (+)
G101282 NA non-coding downstream 221814 26475060 ~ 26475349 (+)
G101061 NA other upstream 1376579 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 3558236 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 5973846 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 7470165 18744887 ~ 18771966 (+)
G100007 NA other upstream 7916227 18320056 ~ 18325904 (+)
G101248 NA other downstream 10669 26263915 ~ 26264308 (+)
G101275 NA other downstream 119907 26373153 ~ 26377699 (+)
G101400 NA other downstream 1637306 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 2324254 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 3370799 29624045 ~ 29652938 (+)

Expression


Co-expression Network