AMCG00015870


Basic Information

Item Value
gene id AMCG00015870
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26270391 ~ 26305794 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015870
CGCAGCTCTCACACGACGCCCTCTAAAGGCGCAGGCCGACGCGAAACAAACAACCCGGGAGGGGATTTCCAGGCAGATCGCTGTTTCCTCCACTTGTTTTGCTTTCGATCTGGACACTGAAAGCAGCCAAGTTAAGTTTTAGTTTTGGTACTGAGTGCCGCCAAACTTAGCGAAAAACTTTTCAGGACTTGAAAGGCGATCGTGCGAGCCCGGGGTCTGCCACAGCAGCGCAGCAAGCGGCTTTCTAACAGGTTAACATGCCCGTTGAAAGGATGCGGATGCGACCATGGTTGGAAGAACAGATCAACTCTGATAAAATACCAGGGCTGAAATGGGTCAACAGGGAGAAGAAGATATTCCAGATACCGTGGATGCACGCAGCACGACATGGCTGGGATGTGGAAAAAGACGCACCTCTCTTTAGAAACTGGGCGATCCATACAGACATCGAGGAGGTAAAAGACAAAAGTATAAAGAAGGGCAGCAATGCGTTCAGAGTCTATAAAATGCTGTCGCCCTCGGAAAGGCCTACGAAGAAAGgaaagAAGAAAGATGAAAAGACCAAAATTAAGTTGGAGGATTCCACTCCTATGTACGAGGAAATCAATGGAGCTGCTGCCCAggacataaatataataaaagttgAAGACATGGTGGACAGCACTGTAACAGGTCTGACAGAAGCCGGCCATGCTGTGAAGGAGGAACAACTGATTTTTAGCAACCCCCCCGATGTGTGCCAGGTGATCGAAGTGACCACCGAGAACGAGGAGCAGTCGGTGAGCTCCAGTCACGCGTACCCGCTGCAGATCTCTCCGGTGTCTTCATACGGAGAGAGCGATACTGACAGTGTGCACAGCGAGGAGGACACGAAAGAGGGCATTCAGCGGTGGCAGCCGAGTGGAGGACAAGGAGATCCGTTCGGAAAGAAGACCTCCACCTACCAGCTCCCAAGTATGGCAACGTTTGTGACGTCGGGGAAAACTAACTTTAAAGTCACCAGTAGCCGAGAGGAGGCTCCCCTAATAGCCTACAGCTCCACCCCCTGGGCGGCCCTTTCACAAGCTATTCCCCCTTCTTTGCCCAGCGGCACCAGTAACAGACCCGAAACCCGAGCCAGCGTCATCATGAAAACGTCAGACGTCTCCAAATCCTCAGTGAAAACGTGCTAAGGGGCGTATTTGCCTCGGGACTGCTGCCGTTAAACTCTCAGCCTGTGCTGTTCCCCAAGTCAACACAGAAGCATgactttaataaattacattttaaaagctctaGCCAGCACTAAGTGCGAGATCTCAGGACAGAAGCAAACTATGATAGGAAAGCCACTTTTATCTTCCCAGccgtgatgttttttttttttgtttttttttatatataatttttgacTTGGCACACCGGGCAGCCAAGATGGGGGATACGGACCAACATGAAGCTGAAAGGGGAAATCAAACAAATCTCAGAtctgacaaaagaaaaagaaactgtgaaatattatatttgaaaacgATATgccttctttttctcttttgtgaATATGTACATAGCGAAATACCATCGTAAATTGCGCCTAGCTTGTGCACCTTACTGAGAACTTATACTGTAAGCAGGATCGAAGGCACTCTGCTGTCTTTTAGACCACAATTACTGCTTCTCTGACTGAGGCTTTAAAGTGTTGAATCCTAACTCGACTATAATCAGTTAAAAGTGCTCGGCCTCTCACCTTTCTGTCTTGGCATATGTAATAAGGTACAATAGTATAATGATAAAGAAGTGATTTAATGCACTAACgacataaaagaaaagaaaaattgaaaaaaaaaaaaaaaatgcttgaaaCCTTTTCCTAAAGcaagcttttgtattttttataaagggAATATTTTATTCAAGATGAATTCTAAGTagatgttttatcttttttaccaaaaataaaaatgtaattttatgattttataaaGAGCAACGCTGAGTTGCTTTTTACTTTGGCACATATTGCTCACGATGTTTGTAATAATGTACAGATGTTTGAGACCTCTTATAgtatgtagatatatatatctatatctatatatctatgtataaaTACGTGTgcttatttgtgtgtatgtgtgtctgtgggtgtgtgtatatacatatacgtatacacacaaacacacaagcagcTATTAATCCTGTGGatcaataaatatacaaatcttaatgaagattattttgtttttacttactgtatttaatgatatattaaaaaaagcatcTAATTTGCTGTGATGAAGAATTGTATGCATGCCTGTATGTTTTGTGCTGAGGCCTAgacaaaactttgacctattTGAAAATCGCCAATTACAATCTATTACCCTGTCGctttttattgaatttgttttatttaaggttgtaatttgcatttcaggTGTAGGTCGATGTTTAGTTTTGGTGTAGGCCTAAGACTAATTGCTAAGCAATTTGGTGTCTGATAAACTAAGAAAACTGTGTGAAAACGTACAATAGTAAAG

Function

GO: NA

KEGG:

id description
K10153 IRF2; interferon regulatory factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015870 True 2519 mRNA 0.42 9 26270391 26305794

Neighbor

gene id symbol gene type direction distance location
AMCG00015868 NA coding upstream 8902 26254913 ~ 26261489 (+)
AMCG00015869 NA coding upstream 17145 26242131 ~ 26253246 (+)
AMCG00015873 NA coding upstream 36316 26227686 ~ 26234075 (+)
AMCG00015866 NA coding upstream 46210 26196664 ~ 26224181 (+)
AMCG00015851 NA coding upstream 101541 26163234 ~ 26168850 (+)
AMCG00015872 NA coding downstream 833 26306627 ~ 26308732 (+)
AMCG00015867 NA coding downstream 27688 26333482 ~ 26356094 (+)
AMCG00015875 NA coding downstream 215396 26521190 ~ 26525630 (+)
AMCG00015876 NA coding downstream 221316 26527110 ~ 26562104 (+)
AMCG00015877 NA coding downstream 256927 26562721 ~ 26567558 (+)
G101116 NA non-coding upstream 544813 25667828 ~ 25725578 (+)
G101107 NA non-coding upstream 774472 25420890 ~ 25495919 (+)
G101088 NA non-coding upstream 860742 25408665 ~ 25409649 (+)
G101087 LOC107575789 non-coding upstream 861855 25388061 ~ 25408536 (+)
G101069 NA non-coding upstream 1159333 25110798 ~ 25111058 (+)
G101270 NA non-coding downstream 58501 26364295 ~ 26365059 (+)
G101271 NA non-coding downstream 61803 26367597 ~ 26367905 (+)
G101272 NA non-coding downstream 63691 26369485 ~ 26369703 (+)
G101273 NA non-coding downstream 64298 26370092 ~ 26370326 (+)
G101282 NA non-coding downstream 169266 26475060 ~ 26475349 (+)
G101248 NA other upstream 6083 26263915 ~ 26264308 (+)
G101061 NA other upstream 1404839 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 3586496 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 6002106 20267407 ~ 20268285 (+)
AMCG00015725 smad1 other upstream 7498425 18744887 ~ 18771966 (+)
G101275 NA other downstream 67359 26373153 ~ 26377699 (+)
G101400 NA other downstream 1584758 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 2271706 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 3318251 29624045 ~ 29652938 (+)
G101752 NA other downstream 3860234 30166028 ~ 30168289 (+)

Expression


Co-expression Network