AMCG00015876


Basic Information

Item Value
gene id AMCG00015876
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26527110 ~ 26562104 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015876
ATGGACGGCATGCAGGAGCGCCGAGAAAACCAAGGAAATACAGTGGACAGCAGCTGGTACATGGACACCGTGGAGGCGCCCGTGTGGGATGCTGCTCTGAGGGAAGACAGGGATGCAATGTGCAAGAAGCCTGATGGACACTGGAGTGTGCCTTATCAGAAAGTCAGCGTGGAAGCATACTCTCACATCAAAGATCACCTACGAgACAAGGGCTTAACCGCTGTGGTGCGTGATGACGATCGACAATTTCAGCAGTTTCTGGAAAATCCTCACAAGATGTTGCAAAGCCTTACAATATTGCAGGAATCCTACTGCCCCGCGACTGAAGAAAGCAAGAGAGCAGAATCTTCAAAACCTCATAATCCTTTAGACGTCAGTAACGATATGTCAACAAACACAGAATCTCCTAACTCTTATAGCAGCACAAGAGAGATGGGATTTGCTGATGAATATGAGAATGTCATTGAGCATTCAGATCATTATAAGATCAAAGCAATTACCCACGGGAATGGCAAAGTGCCCTATTCTttcaagaagaaaatatttatgaTCTATATTTGTGGAGGATATAAAGATACAGCAGTGGAGAGAAATGCACTGAGGGAGAGTGTGTACCCTCAGCTGTACCTTTACTGCAAACAGCGAGGCTATGACTTCAAGCTGGTTGATTTACGCTGGGGTGTGGAGGACGCCGTCAGTGACTGTCACAACACAGTCAGCCTGCACTTGGATTTGCTCAGGGACTGTCAGGACTTAGAGGGGCCCAATTTTTTTAAGTGTCATTCAGAATCACAGATACATGTTTGTAATTTCTGTAACGTTTTCCAGCTGTTCACAGGTCAGAAGCACGACACTCTAATGTTGCCAGTCACCGTCCCAAAATCTGTCTTTGAAGCCATCGTCAGTGCAATTGAAAGAAAGCGAATGGAAGTTTCAAAAAGGAAGGTGACTGAAGCCAAGTCAGGGGTGATCTCAGAGTCCAGTGTTTCGCTGAAAGACACCAACGCTGCTGGCTCTCATACCCATGAACTCCAAAGTTCGAAAGAAAAGcctgtgattttaattaacaacagCCCTGTCCCGGATTCCTCTACCGAGGGTGAGGTCTTCAGCATTGTTCACATAGAAGCAAAATCTGGGTCTGATTTCAAGAAGGAAATCAGTCTCCTTCACTTGTGGTACAAATTTGATGAAAACCATGTTCCTGCAGTGTACTGCCTTCTGCCTGTCAGTACTCACTACAAAGACATTCTTAGTAAAGACCCACTACGGAGACAGCAAGCAAAGAAGAACTGGTTGCATACTTCCCAGAAGATCTGCAGCATCTTCCAGTACTATGGGTCAATAGCAATGGGAGAGAAAACAGCCTCTTCTCTTCTTAGGACAGTACTGGATTTTGAAGTGGAGCAGGGCCTTCGGACAGTTGATCCCCCAGAAAATCATTGTACCTGGTACAAAAGGACCATCACAGACATCAAGTACAACCTACGCAGTGAAAAAGCTTCAGACTACATTGATATTTTGGCCAGCGATCCAGAAATAAACCAGAAGTTATATTCAGCCCATCAGAACTTCATGGAAAACATCCACACAAAGCTGCGTCACACAAATATCTTCGAATACAGTGTGGGCTGGGGGCGAGATGGAATCAACCCTAAGCTCAACAGGTCCCATCTCCATTACACTGAGCGGATCTGCAGTGATTTCCATAGAACTGTTACTGGCCATTTAAACAGAGAGATGCGCTGTGAGCTTCAGGGCTGTGTTGTGGATGGACTGAGAGAAGCACTTGAGAGTTCGTGCCAGAAGCCCGTGGTTCTCATTGGAAGACCCGGAAGTGGCAAGAGTACAGTAATGGCCAGGGCTGCTTATCTGGCTCAAAGCTGGATCCCTGGAAACGTGAGGGTCCTTGTGCGTTTCGTCGGGGTCACTGGGGAGAGTAGAAACGTGCGTCTGCTTCTTCAGAGCTTGTGTTTCCAGCTCTCTGACATGTGCGATGTTCAGGCAAAGTTCTCCGAGAGTCTGCATGAGCTGGCCAATGAGTTCCTTTCTCTGCTTGAGTCAGGGAGAGAGGACAGCCCTGTAGTGATATTACTTGACGGTCTTGATGAACTCTCTGAAGATCATGCCTCAGACATCTCCTGGTTGTCACCTGTCctcccaaaacatgtacatCTTATAGTATCTGCATCAACTGGATCCAGCTGCTTAAAGACATTAGAGGAGCTGACGGTGAAGCCAATCACTGTATTGATGAACCCTCTCAGCCCAGATGACATCAACCGAATGCTAAGGAGAGTGATGGAGAGGGATGGGCGGAGATTAGCACCTGACCAATGGAAGATTCTGACAGAGGCCTGCATGTCCTGCCCGTGTCCACTGTACCTGGAGAATGCCTATGCAGAGAGCAGGCTGTGGACGTCTTTCACGTCACCAGCACATCTGCCCCAGGACCTCTCCAAGCTCTACCAGTCTACTTTGCTCAGGCTGGAAAAGGAGCACGGCCAGCAGCTGGTGAGGAAAACTGCGTCTTTGATCACGCTGTCCAGGAACGGGATCACTGAAGAGGAGCTTCTGGACTTGTTGTCCCTGGATCAGAGAGTGATGCAGGAGATGGCTCTGTCTCATAAACCTCCTGCTCCTCAGTTCCCTTTCGTCCTGTGGGCCAGGCTCAGGCGAGACTTAGGGGATCACCTGATGGAGCAGAACACTGACAACACCTATGTATTTAACTGGACCCATTTAGCTTTAAAGagcgcctgtgaggagaggtacCTGAAGGCAAAGGAGGCCCAGGTGTCCATTCACGCCGAGTACGCTGACTACTTCTTAGGAAATCGGTCGCCCCATTCCAATAGCAAAGCACACAAGTTTATATTTCAGCCATTGACCTGGGTGCTGGAAAAAGACTCGATAAAGAACTACGTTTTCAACATCCAGAAACTCCGCAGCGTTTCATACCACTTGATCAAGGCAGGCCAGATTCCAGCTCTGTTAACCGAGTGCCTGTTCAACTACGAGTTTCTATTGCACAAAGCGTGGGGCTTGTCCATCGTTGATGTGGAAGAGGACTTGAAGTCAGCGGTAACACCAGAGAAAGAGCTAGTCGATGTAAATGTGCTGACAGAGGCTCTGCGGCTGTCTAAGAACGTCTTGCTCCGAGACCCGTGTCAACTGGCCTCCCAGCTAGTTGGGCGTCTATATGAGATCGTCTCCAGTGACCAGCCAGTGGCACCAGTGCTGCTGCTCCTCACTGCCTGTGCTGCTGCCCTCCTTCACCTGCCTCCTGCCCCCGGGAGGACTGCTACACCACCTGCTGGCAGGAGCGGCGCAGAGGCCATGGTGTTCAGTGCCAGGAAGGGAGAGGTTGTGAAGCAGCTCCCGGCCCAACACGGTGTGGCCTCGGTACAGGGAGTTGAAGTGACAAAAGAATACTTTCTCATCTTTTGCAGGTACCCGTTCATGAGGAGCAGTGAAATTGTGCACATTGAGCTGTTCAGCACCAGGAGTTTTGAGTTTCTTCGCTCCATTAAGGGCTGCTGTAACGACCCTGTCTCCAACCTCAGTGTGAACCGAATAGGTTCCCACGTGGTGGCGTTCTGCCCTTCTGCAGACACCAATACGACTGACATCATCTCCTGGAACCTGGAGACCGAGGACCACAAGCACATCGTGAAATCGCCCGGCTTGATAACCGGAGGTACCTGCTTTGACCTGCGATTCTGCCTGGGAGTGTGCAACAATGAAAACTACCTCCGAGTGTGGAATCTGGCCTCGAAGATCAATGACCAGTCTCTCTGTTACAACGTCCACAGAACTCTTCTGATCTTTGACCTCCTGAAGAAGCGGTATATTAAAAAGCAGACAGGCCTGTACATCATCCCCTGTCAGAAGCATGAATACAGGATCCTACAGGGCGACCTGCTGTTGGGACTTTCAGAGAACAGAGACCATTTGATCATGTGGAGCCTTGAGACTGGCTTTATCAAAGGCCGATTGAAGGCTTCATATAAGGAGCAGCCATTGATGTCCAACTCAGTTCAAATTCCTAAGAGCTCAACTGATAAAGGCTTCCAGGAGCTCCAGTACAAGGCAGAGAGAAGACATGACTCTAGAGCCCACATGACTCCCTGGGAGAGACGTAACGAGACTAAAACGGCGCAGAAGAGGAGGCTGGAGAGGGAGGTGAAGAAGGAAAttgaaaagcagcagcagttcTGTAACGAGAAACACAATACCATCGATCAGTATCTCATCAGCCCAGATGAGCAGATTGCGGTGTGCTCCTATTTTGCGCACCATCTGAATGTGTTCAGTCTGCTGTCTCAGACCCACCTTCACACACTGGAAGACCGGACTTCAATGCTTTTCCTTCACAATGCCGCCCTCACGTACAGCGGCAGCTACCTGGCCATTTCAAACTACAGCGACACGGAGAAAGTCAGCTATGTGACACTGTGGGATGTACAAAATGGGAAGGTAAGAAAACGACTGAAGAATGAGCCAAGTGTTTGCTGTGTGGCCATCAATAATGACGCAAGCAGGGTTGTCTTCGGGGTCATGGAAGCAAACAAGCTGAAAGTTTGGGATCCTTTCAGAAGAGTCCATAAAACCATTTCTGGATACGAAAGCCTGAATCTGGGAGTGAACAGCAAGCTGTACATCACAGAGGAGGGAGCGAAAGCAATCCTGCTCACCGgtGAAATCAGCCTCTGGGACCTGAACACTGGCATGGTTATATCCATCTTCACACCTGACAGCAGAATCCAGTGTCTCTCACTGACTTGTGACAGCCGAACCGCTCTGCTCGGACTGAGTGACAGCGCCACGCTCATTACCCTGAAGCTCATGTCAAAAGAGATTGTGAAATCCTCGTCGGCTGGAACAGACCTGTTCGGGGAGCAGTCGAGCACCAgcgaggaggaagaggaagaggatgaaGAACTGGTTTTGAACAGATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015876 True 4962 mRNA 0.49 25 26527110 26562104

Neighbor

gene id symbol gene type direction distance location
AMCG00015875 NA coding upstream 1480 26521190 ~ 26525630 (+)
AMCG00015867 NA coding upstream 171016 26333482 ~ 26356094 (+)
AMCG00015872 NA coding upstream 218378 26306627 ~ 26308732 (+)
AMCG00015870 NA coding upstream 221316 26270391 ~ 26305794 (+)
AMCG00015868 NA coding upstream 265621 26254913 ~ 26261489 (+)
AMCG00015877 NA coding downstream 617 26562721 ~ 26567558 (+)
AMCG00015882 dctd,LOC107671033,LOC107550883,LOC106602441 coding downstream 110640 26672744 ~ 26699429 (+)
AMCG00015886 NA coding downstream 1255732 27817836 ~ 27840281 (+)
AMCG00015887 NA coding downstream 1337293 27899397 ~ 27963113 (+)
AMCG00015890 NA coding downstream 1443980 28006084 ~ 28018896 (+)
G101282 NA non-coding upstream 51761 26475060 ~ 26475349 (+)
G101273 NA non-coding upstream 156784 26370092 ~ 26370326 (+)
G101272 NA non-coding upstream 157407 26369485 ~ 26369703 (+)
G101271 NA non-coding upstream 159205 26367597 ~ 26367905 (+)
G101270 NA non-coding upstream 162051 26364295 ~ 26365059 (+)
G101306 NA non-coding downstream 7000 26569104 ~ 26572523 (+)
G101320 NA non-coding downstream 17609 26579713 ~ 26579971 (+)
G101340 NA non-coding downstream 144772 26706876 ~ 26707101 (+)
G101381 NA non-coding downstream 878923 27441027 ~ 27441243 (+)
G101387 NA non-coding downstream 1107328 27669432 ~ 27669753 (+)
G101275 NA other upstream 149411 26373153 ~ 26377699 (+)
G101248 NA other upstream 262802 26263915 ~ 26264308 (+)
G101061 NA other upstream 1661558 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 3843215 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 6258825 20267407 ~ 20268285 (+)
G101400 NA other downstream 1328448 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 2015396 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 3061941 29624045 ~ 29652938 (+)
G101752 NA other downstream 3603924 30166028 ~ 30168289 (+)
G101870 NA other downstream 4241985 30804089 ~ 30809238 (+)

Expression


Co-expression Network