AMCG00015882 (dctd,LOC107671033,LOC107550883,LOC106602441)


Basic Information

Item Value
gene id AMCG00015882
gene name dctd,LOC107671033,LOC107550883,LOC106602441
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 26672744 ~ 26699429 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015882
gtttattttcagaCCATCACTGACAAGTCGCTGCACTGCCACGCAGTGGACGCGGGCGAACCTTAGAAATACGTCACTTCCGGGAAGAGACCAGCTTCCGCAGTCGTGTGCCAGCGCGGGAAATAGAAGCGTGTTTAGAGCTGACGAGGTCAGACTGCCGACAGCTGGAGCTATGGACGGTCATCATTGCAACGGCTCTTCCGAACAAAATGGGACCGGGGCGGCATCTCCTCACAAGAAGAGAGAAGACTACCTGGAGTGGCCTGAATATTTCATGGCAGTTGCTTTCCTGTCAGCTCAAAGAAGCAAGGATCCAAGCTCGCAGGTTGGGGCCTGCATTGTCAGCCAAGAAAACAAGATTGTGGGAATAGGCTATAACGGGATGCCCAACGGCTGCAGCGATGACCTCCTCCCCTGGTCTAGGAGTGCATCTGACAAGCTGGACACCAAGTATCCATATGTGTGCCATGCTGAACTCAACGCCATTATGAACAAGAACTCGGCGGATGTGAAGGGATGCACGATGTATGTCGCCTTGTTCCCCTGTAATGAATGTGCAAAACTCATCATCCAGGCAGGTATCAAGGAAGTGATTTATTTGTCAGACAAGTACCACGATACCCCAGAAATGACTGCCTCCAGACGCTTGTTTAACTTGGCGGGAATTAAGTACATGGATGGTGCTGAATACCCTTGA

Function

symbol description
dctd Predicted to enable dCMP deaminase activity. Predicted to be involved in dTMP biosynthetic process and dUMP biosynthetic process. Orthologous to human DCTD (dCMP deaminase).

NR:

description
PREDICTED: deoxycytidylate deaminase-like isoform X2

GO: NA

KEGG:

id description
K01493 comEB; dCMP deaminase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015882 True 697 mRNA 0.51 7 26672744 26699429

Neighbor

gene id symbol gene type direction distance location
AMCG00015877 NA coding upstream 105186 26562721 ~ 26567558 (+)
AMCG00015876 NA coding upstream 110640 26527110 ~ 26562104 (+)
AMCG00015875 NA coding upstream 147114 26521190 ~ 26525630 (+)
AMCG00015867 NA coding upstream 316650 26333482 ~ 26356094 (+)
AMCG00015872 NA coding upstream 364012 26306627 ~ 26308732 (+)
AMCG00015886 NA coding downstream 1118407 27817836 ~ 27840281 (+)
AMCG00015887 NA coding downstream 1199968 27899397 ~ 27963113 (+)
AMCG00015890 NA coding downstream 1306655 28006084 ~ 28018896 (+)
AMCG00015889 NA coding downstream 1338382 28037811 ~ 28040997 (+)
AMCG00015893 LOC106610164,LOC106602380 coding downstream 1449465 28148894 ~ 28167077 (+)
G101320 NA non-coding upstream 92773 26579713 ~ 26579971 (+)
G101306 NA non-coding upstream 100221 26569104 ~ 26572523 (+)
G101282 NA non-coding upstream 197395 26475060 ~ 26475349 (+)
G101273 NA non-coding upstream 302418 26370092 ~ 26370326 (+)
G101272 NA non-coding upstream 303041 26369485 ~ 26369703 (+)
G101340 NA non-coding downstream 7447 26706876 ~ 26707101 (+)
G101381 NA non-coding downstream 741598 27441027 ~ 27441243 (+)
G101387 NA non-coding downstream 970003 27669432 ~ 27669753 (+)
G101404 NA non-coding downstream 1296381 27995810 ~ 27996946 (+)
G101486 NA non-coding downstream 1746487 28445916 ~ 28446217 (+)
G101275 NA other upstream 295045 26373153 ~ 26377699 (+)
G101248 NA other upstream 408436 26263915 ~ 26264308 (+)
G101061 NA other upstream 1807192 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 3988849 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 6404459 20267407 ~ 20268285 (+)
G101400 NA other downstream 1191123 27890552 ~ 27992014 (+)
AMCG00015901 NA other downstream 1878071 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 2924616 29624045 ~ 29652938 (+)
G101752 NA other downstream 3466599 30166028 ~ 30168289 (+)
G101870 NA other downstream 4104660 30804089 ~ 30809238 (+)

Expression


Co-expression Network