AMCG00015887


Basic Information

Item Value
gene id AMCG00015887
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 27899397 ~ 27963113 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015887
ATGACCAAGATCAAGAAGATACCAagTGTGGATGAACTCATGAAATTAGTCTATCCGAATTATTGGACGATATTGAAGTGTCAATCCAAGCGAGCTCTGCCCATCAGAGAGCCGGCTGCCTCGGACTCGAGGACCGGAGAGCCGCTAATATTCGCTGCAGCTTTTTTCAGCATGGAGATTTATAAAAGTATTGAATCTGAGTGGAGAAAGACCGAATGCATGCCGCGAGAAGTTTGTTTAGATGTGGGAAAAGAGTCTGGGGGATCGACAAACACCTTCTATAAACCATCCTGCGTGTGTGTCTACAGATGTGGGGGCTGCTGCAACAGTGAAGGTCTACAGTGTGTGAACATTAGTACCTCTTACGTCAGCAAATCAGTAAGTTCTGACATGAATACCGACGGGGGCACACAGCACCAGCCACCAGTCAAGCGACTAGTCCAGACACCGCCAAGGTCAAATGGTGACATTTGCCGAAACAGATCAAACGCAATTGTCAAGTGTCGGGTCCTGGTAATTGAGGTAACCAGTCCAGTGCCTCAAGGAACAAAGCCAGTCACAATCAGCTTTGCAAACCACACGTTATGTCGCTGCTTGTCTAAGTTGGATGTCTACAGACAAGTGCATTCAATCATTAGGCGGTCTCTACCAGAGTGTCACGTGGCTAACAAAACCTGTCCCAAGAATCATGCCTGGAATAACCGCCTCTGCAGATGTGTGAAGCAACATGACTTTGGCTTTCCTTCACAGTACTCAGGCTCTCACTCTTTTGCCGGATTCGATGATATCTGCGGACCAAACAGAGAACTGGACGAGGAGAcctgccagtgtTTGCTACCGGCCACCATGCGAAGCTCGGAGGAAGTGGTGCGAGACGGGGCTATACTTCAGCGAGGAAGTATGCCGCTGCATCCCAACGTACTGGAGAAGACTGGATTGAACACCCCGGCAGTGCTGTCCTACCATAGCGAAGCGCTGATGAACCACAAAAGGCACATCTGTGAGGACTCAGTGGTGCCGATGGTCCAGCCTCACTACAAGGCTCCACAGCCCTGCTTTGACCTGGCCAGCGCACTCACAACACATGGGCGCTGA

Function

GO: NA

KEGG:

id description
K05449 VEGFC_D; vascular endothelial growth factor C/D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015887 True 1095 mRNA 0.50 9 27899397 27963113

Neighbor

gene id symbol gene type direction distance location
AMCG00015886 NA coding upstream 59116 27817836 ~ 27840281 (+)
AMCG00015882 dctd,LOC107671033,LOC107550883,LOC106602441 coding upstream 1199968 26672744 ~ 26699429 (+)
AMCG00015877 NA coding upstream 1331839 26562721 ~ 26567558 (+)
AMCG00015876 NA coding upstream 1337293 26527110 ~ 26562104 (+)
AMCG00015875 NA coding upstream 1373767 26521190 ~ 26525630 (+)
AMCG00015890 NA coding downstream 42971 28006084 ~ 28018896 (+)
AMCG00015889 NA coding downstream 74698 28037811 ~ 28040997 (+)
AMCG00015893 LOC106610164,LOC106602380 coding downstream 185781 28148894 ~ 28167077 (+)
AMCG00015896 glra3,LOC106610166,LOC106602381 coding downstream 376299 28339412 ~ 28372662 (+)
AMCG00015894 NA coding downstream 421801 28384914 ~ 28386688 (+)
G101387 NA non-coding upstream 229644 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 458154 27441027 ~ 27441243 (+)
G101340 NA non-coding upstream 1192296 26706876 ~ 26707101 (+)
G101320 NA non-coding upstream 1319426 26579713 ~ 26579971 (+)
G101306 NA non-coding upstream 1326874 26569104 ~ 26572523 (+)
G101404 NA non-coding downstream 32697 27995810 ~ 27996946 (+)
G101486 NA non-coding downstream 482803 28445916 ~ 28446217 (+)
G101504 NA non-coding downstream 626460 28589573 ~ 28591059 (+)
G101555 NA non-coding downstream 1203822 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 1211664 29174777 ~ 29177324 (+)
G101275 NA other upstream 1521698 26373153 ~ 26377699 (+)
G101248 NA other upstream 1635089 26263915 ~ 26264308 (+)
G101061 NA other upstream 3033845 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 5215502 22678837 ~ 22683895 (+)
G100338 herc3 other upstream 7631112 20267407 ~ 20268285 (+)
AMCG00015901 NA other downstream 614387 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 1660932 29624045 ~ 29652938 (+)
G101752 NA other downstream 2202915 30166028 ~ 30168289 (+)
G101870 NA other downstream 2840976 30804089 ~ 30809238 (+)
G101930 NA other downstream 3299348 31262461 ~ 31287766 (+)

Expression


Co-expression Network