AMCG00015889


Basic Information

Item Value
gene id AMCG00015889
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 28037811 ~ 28040997 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015889
ATGGCTGGCTACGATCAGCCTCCTAGGAGAACTGGGATCCCCCGGGACGTGCTCAAGTGGCTGCAAAGCCTGGACCTGTCCTTTTCTCCCAAGAATGCTCGAAGAGACTTTTGCAATGGCTACCTGGTGGCGGAGATCTTCTCTTGGTACTATCCCGGGGATTTCCCCATGCACTCCTACGACAATGGTGTGTCACTGCCCACCAAACTGGGGAACTGGTCCCAGATAGAAAGGGTTCTTTCGAAGCGCGACGTCAGCCTCCCCAAAGAGTTGATCGATGGGACAATTCACTGTAAACCTGGAGCTGCAGAGATTTTAATTCAGGAGATGTACACTTTGCTGACAAACAGGCAAATTAAAAGTGTCCAGGAAGAGGAGACCGACTTCACCGACCGTAACTATCAGGAGAAGCTTCCTATGGTGGCCAGATCCACCGCCTCCAAAGCCATCAAGAACAACCTGAGACTCAGCGAGGTGATAGCCGAGCCCAACATCAGCACCAACAGGCAGAAAGCGCGGGCCATCATCCACATGCACATGCAGCGGCGGCAGACCGAGAGAGTTGAGGACCCGAAGCGGTTTAACGTGAAACCAACCCTGGGAGAGCTTGCCATCCGGGTCCCACCACGGGTAAAGCAATGCCAGGATGCGAACACAGAAGTGCCTCGGCAGAAGAGCAGCACAGACGCGAGCAGTGGAGCAAAGTCGCGTGCGTCTGCAATCCGA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015889 True 726 mRNA 0.55 6 28037811 28040997

Neighbor

gene id symbol gene type direction distance location
AMCG00015890 NA coding upstream 18915 28006084 ~ 28018896 (+)
AMCG00015887 NA coding upstream 74698 27899397 ~ 27963113 (+)
AMCG00015886 NA coding upstream 197530 27817836 ~ 27840281 (+)
AMCG00015882 dctd,LOC107671033,LOC107550883,LOC106602441 coding upstream 1338382 26672744 ~ 26699429 (+)
AMCG00015877 NA coding upstream 1470253 26562721 ~ 26567558 (+)
AMCG00015893 LOC106610164,LOC106602380 coding downstream 107897 28148894 ~ 28167077 (+)
AMCG00015896 glra3,LOC106610166,LOC106602381 coding downstream 298415 28339412 ~ 28372662 (+)
AMCG00015894 NA coding downstream 343917 28384914 ~ 28386688 (+)
AMCG00015897 NA coding downstream 355975 28396972 ~ 28399528 (+)
AMCG00015895 fbxo8,LOC107670846,LOC107752227 coding downstream 391041 28432038 ~ 28441312 (+)
G101404 NA non-coding upstream 40865 27995810 ~ 27996946 (+)
G101387 NA non-coding upstream 368058 27669432 ~ 27669753 (+)
G101381 NA non-coding upstream 596568 27441027 ~ 27441243 (+)
G101340 NA non-coding upstream 1330710 26706876 ~ 26707101 (+)
G101320 NA non-coding upstream 1457840 26579713 ~ 26579971 (+)
G101486 NA non-coding downstream 404919 28445916 ~ 28446217 (+)
G101504 NA non-coding downstream 548576 28589573 ~ 28591059 (+)
G101555 NA non-coding downstream 1125938 29166935 ~ 29167213 (+)
G101556 NA non-coding downstream 1133780 29174777 ~ 29177324 (+)
G101558 NA non-coding downstream 1141534 29182531 ~ 29182869 (+)
G101400 NA other upstream 45797 27890552 ~ 27992014 (+)
G101275 NA other upstream 1660112 26373153 ~ 26377699 (+)
G101248 NA other upstream 1773503 26263915 ~ 26264308 (+)
G101061 NA other upstream 3172259 24865089 ~ 24865552 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other upstream 5353916 22678837 ~ 22683895 (+)
AMCG00015901 NA other downstream 536503 28577500 ~ 28580829 (+)
AMCG00015918 g3bp2,LOC106578160,LOC107714642,LOC106610282 other downstream 1583048 29624045 ~ 29652938 (+)
G101752 NA other downstream 2125031 30166028 ~ 30168289 (+)
G101870 NA other downstream 2763092 30804089 ~ 30809238 (+)
G101930 NA other downstream 3221464 31262461 ~ 31287766 (+)

Expression


Co-expression Network